LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5230g00019	ATGGAGTTCTTCGACGAGGACGCTAGGCCAAGGTTCCTCTTCCAATCTCAAGCTAAAGCTTCTTCTGCTTCAGATTCACAAGATTACCACAAACCCAGCAAGCCATTCCTCTTCTTTACCATTTCACTTTCTTGCCTTTTCTTCGCTCTCTCAATTTTCTACCTCCAATCCGAACCCTTTCGATCCATCCTAATCTGGTTCTCTCTTTCTCTCCTCATCGGTCCCTTTGCTCCCATTTCCCTCACCGGCGGCGACGTCCGCGTCGGCCATGGTTCAATTGTTGAGTTCCCCAATGAAGAAGTCGCAGTCGATGAAGACACAAGCAAGAGGTCTTCTCAGAAGAGATCGAAGGCTCGTAGATCTGAGGATACAGCGATCGGTCCCATCGTCTCGATTGATAGCGTCAACACGTCTGAGCGGGCGGAGAAGAAGAATCAAGGAGTTGGTGGAAATGGTGTGGTATTGAATGAAGAGAAGGAGTGGACTGAAGAAGACGTTGAGATTTTGAAGAAACAGATGTCGAAGCATCCGGTGGGAAAACCTAGACGATGGGAGGTAATTGCAGAGGCATTCAGCGGGCGGCATAGGATGGAGAGTGTCATCAAGAAGGCAAAGGAATTAGGAGAGAAGAAGCTTGATGACTCTGACTCGTATACACAGTTTTTGAAGAAGAGAAAACCGGTGGATAAGAGACTTGATAATGGGAATGGAGATTTGGGAGGTGAACCGGAGGGGAAAGCTGACGATGGTACTGGTGAAGGAGCTGGAAGTGGTTGGAGTGCAGGGGAGGATATTGCACTGCTTAACGCTTTGAAGGCATTTCCAAAGGATGCTGCTATGAGATGGGAGAAGATTGCGGCTGCTGTACCGGGAAAATCCAAAGCGGCTTGCATGAAAAGAGTCACTGATCTGAAAAAGGAGTTTAGGAGTGCAAAAGCTGCCGCAGATGGGTAG	954	0.4843	MEFFDEDARPRFLFQSQAKASSASDSQDYHKPSKPFLFFTISLSCLFFALSIFYLQSEPFRSILIWFSLSLLIGPFAPISLTGGDVRVGHGSIVEFPNEEVAVDEDTSKRSSQKRSKARRSEDTAIGPIVSIDSVNTSERAEKKNQGVGGNGVVLNEEKEWTEEDVEILKKQMSKHPVGKPRRWEVIAEAFSGRHRMESVIKKAKELGEKKLDDSDSYTQFLKKRKPVDKRLDNGNGDLGGEPEGKADDGTGEGAGSGWSAGEDIALLNALKAFPKDAAMRWEKIAAAVPGKSKAACMKRVTDLKKEFRSAKAAADG	317

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5230g00019	317	PANTHER	DNAJ HOMOLOG SUBFAMILY C MEMBER 2	134	314	IPR044634	GO:0006450\|GO:0030544\|GO:0043022\|GO:0051083
	Pral5230g00019	317	CDD	SANT	259	305	IPR001005	-
	Pral5230g00019	317	CDD	SANT	160	207	IPR001005	-
	Pral5230g00019	317	MobiDBLite	consensus disorder prediction	104	122	-	-
	Pral5230g00019	317	Gene3D	-	251	315	-	-
	Pral5230g00019	317	SMART	sant	255	307	IPR001005	-
	Pral5230g00019	317	SMART	sant	157	210	IPR001005	-
	Pral5230g00019	317	FunFam	Myb family transcription factor	253	313	-	-
	Pral5230g00019	317	MobiDBLite	consensus disorder prediction	216	259	-	-
	Pral5230g00019	317	ProSiteProfiles	Myb-like domain profile.	259	305	IPR001005	-
	Pral5230g00019	317	MobiDBLite	consensus disorder prediction	216	249	-	-
	Pral5230g00019	317	Gene3D	-	156	213	-	-
	Pral5230g00019	317	SUPERFAMILY	Homeodomain-like	256	304	IPR009057	-
	Pral5230g00019	317	SUPERFAMILY	Homeodomain-like	159	197	IPR009057	-
	Pral5230g00019	317	MobiDBLite	consensus disorder prediction	104	123	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5230g00019	Pral-Chr5230	137731	139009	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pral5230g00019		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5230g00019	-		-	zju:107430435	361.303