Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5230g00009 ATGGTTTGCACTGCTAGGGATATACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGAAGTTCTGCTTCGGAGATAGCAACAAAGCTGGAGGCCATGGACTATATCGTCTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAGTCTCCAGCAAACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTCAGTACCAGCAGCCTGGGAAGTTTCAAAATTCTTGAGTATGCCAAAGACTTGCCTACCATCATGACTTCAGACAATCACTGCTTGAGCACCATGATGAAGTGTGTAGCGCTTGGTGCAGTTGAGTTCCTAAACAAACCACTCTCCGAGGAAAAACTCAGGAATATCTGGCAGCATGTTGTTCACAAGGCGTTCAACACTGGGACAAGTGTCCTGCCTAAATCACTAGAAACTGTCAAAGAATCTGTGGTATTGCAGCTTCAAACAGACAGTGGGGAGCATGGAAGTTTAAATTTAGAGGAGTCTAGGTTCAGTGATGATGATCATGAGCAGTCTGCAGGAAGTGAAAAGTACCCTGCTCCTTCAACTCCACAACTAAAACAGGGGGCAAGGTTAATGGACGACGGAGATTGCCAAGAACAAACTAATTGTTCAGCAGAAAAAGAAAGTGAGGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGTGGGACTTTGAATGCCAACGGTACTTGTCAACCAGTGAAACCTGAAAAGGCACTGAACATGGAGGATGAGAACCTTGCAAATGATTCTAAGAGTGAGAAAGTTGTTTCTCCATCTGTACATGATAGTGTTCTCAGCAACATTGAAGGTGACACTGTATCTCCAAATAAACCAGGTGTTAATAGTGATTCCCGTCAAATCAAAACTAAGAAGAAGGTAGACTGGACGCCTCAACTGCACAAGAAGTTTGTGAAGGCAGTGGAAAAATTAGGGGTTGATCAAGCAATTCCTTCTCGAATACTGGAGCTCATGAATGTGGAGGGCTTGACAAGGCATAATGTGGCAAGTCATCTTCAGAAATATAGAATGCAGAGGAGGCAAATCTTGCCAAAGGAAGATCGAAGATGGGTACAAAGACCAGTTATGGCTTTCCCTCCATATTATTCTAACTGCACCCCATCACCAGCTCATGTGTATCCTATCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATGCTTGGGGCCCACTGGGTTATCCCCCATTTCATCCTACTGAAAGTTGGCACTGGAAGCCATATCATACGATGCATGCTGATGCATGGGGTTGCCCAGTGTTGCCAGCTTCTCAAGCTCCTTGTATTTCGCTCTCTCAAAATATACCTGGATGGGATAATGCTAATGCAGTTAATTGTAGTGCTAGCAAGTTAGGGAATTCCTGCGAATATCATGTGGCAGAAGATGTTGTTGACAAGACAGTGAAGGAGGCAATTAGCAAGCCATGGCTACCAATGCCACTAGGCCTCAAACCCCCTTCCATTGATTGCGTGTTGGCTGAGCTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGTTCCAGGCATGCTAAACCAGAACCAGAACCCAAACCCCAGTGA 1617 0.4539 MVCTARDIQEWKDFPKGLRVLLLDGDRSSASEIATKLEAMDYIVSTFCDENEALSAVSSKPEGFHVAIVEVSTSSLGSFKILEYAKDLPTIMTSDNHCLSTMMKCVALGAVEFLNKPLSEEKLRNIWQHVVHKAFNTGTSVLPKSLETVKESVVLQLQTDSGEHGSLNLEESRFSDDDHEQSAGSEKYPAPSTPQLKQGARLMDDGDCQEQTNCSAEKESEDHDGESKFVETTCGTLNANGTCQPVKPEKALNMEDENLANDSKSEKVVSPSVHDSVLSNIEGDTVSPNKPGVNSDSRQIKTKKKVDWTPQLHKKFVKAVEKLGVDQAIPSRILELMNVEGLTRHNVASHLQKYRMQRRQILPKEDRRWVQRPVMAFPPYYSNCTPSPAHVYPIWGQSGSQPASMHAWGPLGYPPFHPTESWHWKPYHTMHADAWGCPVLPASQAPCISLSQNIPGWDNANAVNCSASKLGNSCEYHVAEDVVDKTVKEAISKPWLPMPLGLKPPSIDCVLAELSRQGISTIPPCSRHAKPEPEPKPQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5230g00009 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 300 359 IPR017930 -
Pral5230g00009 538 MobiDBLite consensus disorder prediction 279 296 - -
Pral5230g00009 538 Pfam Myb-like DNA-binding domain 306 355 IPR001005 -
Pral5230g00009 538 Gene3D - 300 361 - -
Pral5230g00009 538 NCBIfam myb-like DNA-binding domain, SHAQKYF class 303 357 IPR006447 GO:0003677
Pral5230g00009 538 MobiDBLite consensus disorder prediction 279 302 - -
Pral5230g00009 538 SUPERFAMILY Homeodomain-like 301 359 IPR009057 -
Pral5230g00009 538 FunFam Two-component response regulator-like APRR2 17 142 - -
Pral5230g00009 538 ProSiteProfiles Response regulatory domain profile. 19 131 IPR001789 GO:0000160
Pral5230g00009 538 FunFam Two-component response regulator 299 362 - -
Pral5230g00009 538 Gene3D - 11 137 - -
Pral5230g00009 538 MobiDBLite consensus disorder prediction 159 227 - -
Pral5230g00009 538 SMART REC_2 18 127 IPR001789 GO:0000160
Pral5230g00009 538 CDD REC_typeB_ARR-like 20 131 - -
Pral5230g00009 538 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 525 IPR044825 GO:0003700|GO:0045893
Pral5230g00009 538 MobiDBLite consensus disorder prediction 211 227 - -
Pral5230g00009 538 SUPERFAMILY CheY-like 16 133 IPR011006 -
Pral5230g00009 538 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5230g00009 Pral-Chr5230 66116 72567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5230g00009 1 526 Response Regulator Gene Family AT4G18020 50.268 3.84e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral5230g00009 Myb_DNA-binding 2.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5230g00009 - - gmx:100784905 707.212