Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5228g00001 CCCTCCTTCTTCCTTTCTCCTCTCCTCTCCTCTCATCCTCATGGCTCTTCCTCCTCCTGTTTCTACTTCCTCACACCTCGAGCTTGTTCTAGGGCTGGTTCCGGCGTTGCCGCCGTTGATGACACCACCACCACTGCTCCCAAGAAACCTTCCTCTAATCTCACGGTTGCCAGTGGTGTCTGCGAGCCATCTCTGACGTTGGGTCTCTCGGCCGGCGACACTTACCTTGTGCCTAAGAGGATTGATGTGAATATCAAAGCTAATTGGGAGGAAACTCCTCCTGATCACTTGTCTCGCCAGACTTCTTCGCCTCACAGCGTGGTTTCGTCTTTCTCTGTGGGGAGGGTCAAGAGGGAGAGAGATCTCAGCAGCGAGGAGGCCGAGGCCGAGAGGGTTTCTTCCAGAGTCAGCGATGAAGATGAAGACGGCACTAATGCCAGAAAGAAGCTCAGGCTCAACAAAGAACAATCTGCTCTCCTCGAGGAAAGCTTCAAACAGCACAGCACACTCAACCCGAAGCAAAAGCAAGCGTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTAAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTGCAGAAAGAGCTGCAAGAGCTGAAGGCGCTGAAGCTGTCTCACCCGCTGTACGTGCCGATGCCGGCGGCGACGCTCACCATGTGCCCGTCTTGCGAGAGGCTGGGCGGCGTTGGGGACGGTGGTTCCAATAAAACCCCATTCTCCATGACTCCCAAGGCCGCTCACCTCTACAACCCCTTCAACAATCCTTCGGCAGCATGTTGA 882 0.5431 PSFFLSPLLSSHPHGSSSSCFYFLTPRACSRAGSGVAAVDDTTTTAPKKPSSNLTVASGVCEPSLTLGLSAGDTYLVPKRIDVNIKANWEETPPDHLSRQTSSPHSVVSSFSVGRVKRERDLSSEEAEAERVSSRVSDEDEDGTNARKKLRLNKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSHPLYVPMPAATLTMCPSCERLGGVGDGGSNKTPFSMTPKAAHLYNPFNNPSAAC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5228g00001 293 SMART HOX_1 145 207 IPR001356 GO:0003677
Pral5228g00001 293 FunFam Homeobox-leucine zipper protein 18 132 208 - -
Pral5228g00001 293 MobiDBLite consensus disorder prediction 91 148 - -
Pral5228g00001 293 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Pral5228g00001 293 MobiDBLite consensus disorder prediction 94 110 - -
Pral5228g00001 293 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Pral5228g00001 293 MobiDBLite consensus disorder prediction 114 148 - -
Pral5228g00001 293 Gene3D - 152 201 - -
Pral5228g00001 293 SUPERFAMILY Homeodomain-like 137 204 IPR009057 -
Pral5228g00001 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 64 270 - -
Pral5228g00001 293 Coils Coil 209 239 - -
Pral5228g00001 293 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Pral5228g00001 293 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Pral5228g00001 293 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Pral5228g00001 293 CDD homeodomain 147 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5228g00001 Pral-Chr5228 6071 7563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5228g00001 33 293 Homeobox Transcription Factor Family AT4G37790 60.432 8.66e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5228g00001 Homeodomain 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5228g00001 K09338 - jre:109019457 344.354