Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5227g00061 ATGGCTCTTCCTCCTCCTGTTTCTACTTCCTCACACCTCGAGCTTGTTCTAGGGCTGGGTTCCGGCGTTGCCGCCGTTGATGACACCACCACCACTGCTCCCAAGAAACCTTCCTCTAATCTCACGGTTGCCAGTGGTGTCTGCGAGCCATCTCTGACGTTGGGTCTCTCGGCCGGCGACACTTACCTTGTGCCTAAGAGGATTGATGTGAATATCAAAGCTAATTGGGAGGAAACTCCTCCTGATCACTTGTCTCGCCAGACTTCTTCGCCTCACAGCGTGGTTTCGTCTTTCTCTGTGGGGAGGGTCAAGAGGGAGAGAGATCTCAGCAGCGAGGAGGCCGAGGCCGAGAGGGTTTCTTCCAGAGTCAGCGATGAAGATGAAGACGGCACTAATGCCAGAAAGAAGCTCAGGCTCAACAAAGAACAATCTGCTCTCCTCGAGGAAAGCTTCAAACAGCACAGCACACTCAACCCGAAGCAAAAGCAAGCGTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTAAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTGCAGAAAGAGCTGCAAGAGCTGAAGGCGCTGAAGCTGTCTCACCCGCTGTACGTGCCGATGCCGGCGGCGACGCTCACCATGTGCCCGTCTTGCGAGAGGCTGGGCGGCGTTGGGGACGGTGGTTCCAATAAAACCCCATTCTCCATGACTCCCAAGGCCGCTCACCTCTACAACCCCTTCAACAATCCTTCGGCAGCATGTTGA 843 0.5433 MALPPPVSTSSHLELVLGLGSGVAAVDDTTTTAPKKPSSNLTVASGVCEPSLTLGLSAGDTYLVPKRIDVNIKANWEETPPDHLSRQTSSPHSVVSSFSVGRVKRERDLSSEEAEAERVSSRVSDEDEDGTNARKKLRLNKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSHPLYVPMPAATLTMCPSCERLGGVGDGGSNKTPFSMTPKAAHLYNPFNNPSAAC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5227g00061 280 MobiDBLite consensus disorder prediction 81 97 - -
Pral5227g00061 280 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Pral5227g00061 280 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Pral5227g00061 280 FunFam Homeobox-leucine zipper protein 18 119 195 - -
Pral5227g00061 280 CDD homeodomain 134 191 IPR001356 GO:0003677
Pral5227g00061 280 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Pral5227g00061 280 Gene3D - 139 188 - -
Pral5227g00061 280 SMART HOX_1 132 194 IPR001356 GO:0003677
Pral5227g00061 280 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Pral5227g00061 280 Coils Coil 196 226 - -
Pral5227g00061 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 33 257 - -
Pral5227g00061 280 MobiDBLite consensus disorder prediction 101 135 - -
Pral5227g00061 280 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Pral5227g00061 280 MobiDBLite consensus disorder prediction 78 135 - -
Pral5227g00061 280 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5227g00061 Pral-Chr5227 540470 541970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5227g00061 15 280 Homeobox Transcription Factor Family AT4G37790 60.777 1.22e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5227g00061 Homeodomain 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5227g00061 K09338 - jre:109019457 348.206