Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5227g00055 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAAAGGGCCATGGTCGCCCGAGGAAGACGCCAAACTCAAAGCTTACATCGAGCAGCACGGCACCGGCGGCAACTGGATAGCGCTTCCTCAAAAGATAGGACTTAAGAGATGTGGGAAAAGCTGTCGTCTCAGATGGTTGAATTATCTTCGCCCCAACCTCAAGCATGGGAGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATAATAGCGGCGCAATTACCAGGGAGAACCGACAATGATATAAAGAACTACTGGAACACCAGGCTGAAGAAGAAGCTACTGGGGAAGCAGCGTAGGCAACAAGAAGCCCAAGCTCGCCGAGCTAACACGCTTAAGCAAGAACTTAAGAGACAGACTAATAATTTGGTGCTGATGAACCAAGCTCCTTCTTTGTCTGTGCATCAGCCCTCTGCAAGTGCTTCGATCCAAGAGTCCTACGATCTCAACAATAATCTAAGAAACCTTTTAACTAAACTAGGTGGAAACTTCTCCCCTGATGATCATATCCCTCAATACCCATATGAATGTGACCCTTTCTTCTTCCCCCAAGACCAGCTATATCCAGTTCCAAACTCAGTGATAAACGATTGCAGTACTTCGAACGTCTTTGAAGGATTTCAAATTGAAAACTTGCCGAGTAATGATTTGAGCCAGATGGGCTGTGTGAACACTACTACGCAGCAAATGGATGGATTTCAGAGTTGCAGTGGAGTAATGGAGTCGTCTACGGCCACCACTTCAACGGAAAGTACCAGTTGGGCAGACATGAGCTCTCTGCTTAATTACTCTCCGAACATGGTTTCCGAATACCAAGAAATAATGTTGCCTCAAGATGTTGCTTTCGAGGATTCTGCCTACTTTGGACACAATAATAACTTCTCTGTACATGGGATGGTCTGA 972 0.4599 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGSFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRRQQEAQARRANTLKQELKRQTNNLVLMNQAPSLSVHQPSASASIQESYDLNNNLRNLLTKLGGNFSPDDHIPQYPYECDPFFFPQDQLYPVPNSVINDCSTSNVFEGFQIENLPSNDLSQMGCVNTTTQQMDGFQSCSGVMESSTATTSTESTSWADMSSLLNYSPNMVSEYQEIMLPQDVAFEDSAYFGHNNNFSVHGMV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5227g00055 323 SMART sant 67 115 IPR001005 -
Pral5227g00055 323 SMART sant 13 64 IPR001005 -
Pral5227g00055 323 FunFam Transcription factor RAX3 7 68 - -
Pral5227g00055 323 FunFam Transcription factor RAX3 70 145 - -
Pral5227g00055 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral5227g00055 323 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pral5227g00055 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pral5227g00055 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pral5227g00055 323 Gene3D - 7 68 - -
Pral5227g00055 323 PANTHER OS09G0431300 PROTEIN 1 280 - -
Pral5227g00055 323 Gene3D - 69 146 - -
Pral5227g00055 323 CDD SANT 16 62 IPR001005 -
Pral5227g00055 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral5227g00055 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral5227g00055 323 CDD SANT 70 113 IPR001005 -
Pral5227g00055 323 Coils Coil 122 152 - -
Pral5227g00055 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5227g00055 Pral-Chr5227 493635 495150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5227g00055 1 127 MYB Transcription Factor Family AT3G49690 89.844 9.00e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5227g00055 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5227g00055 K09422 - gmx:106795158 342.043