Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5227g00042 ATGAAGGACACGCTTGAAAGACATACTCTTTTGGAAAAATCTCTTGGTTTTGTATATGAGATGAGATTAGGAACTTACTATCTCATCTTGCTACTTGGGGAAGGCCAGGACATGGAAACTTCACTTATAAACTCCTTCTTCTCTGTATGCTTGTTGCTAACTCTTAGGTTTTCAGAGTCTGTAGGAAGCTGGAATAGCTGTCCAGAACCTGAAACAACATGCGGAAACCTTCCTGTTCGGTTTCCTTTCCGAGTAATAGGACGCCAACCAGCACAGTGCGGCTATCCTGGGTTTGATTTACAATGTTCTTCTGCCAATCACGCTATTCTTGAGCTTCCTGGATCAGTCCATTTCAATGTCAAACATATTGATTACAAATTTCAAACCATTCAACTATATGCTTCTGGTTGCCTTTCAAGGCATTTACGTAACTTCACTCTTCTTCCTTCCCCTTTCAAGTTCACCGACCGGAATCTTGCTGACTTTACAATTTTCAATTGCTCGTCACCAAGAGATGGAGCACTTATTTCAACTTGCCTCAGTAGCTCTACTTACCAAGTATATGCCGTTTCATCCTATAGTCTGATTCGTGGACTTCCCTTGTTATTTTGCAGCAAAATATTTAACATTTCATTTGTTCCGCCTGAAATTTTTAATGTTGAGAACACTCTTCATTTGATGTGGTCTAATCCATTGTGCAAACATTGTGAATCAAATGGAGCAATATGTGGATTCAACAATGGTAATAGAGGCAATGATACTACATGTTTCAAGGATCCTCACCGTGGTTCATCAAACAAATTTGTAATTACAGGATCAATCATGGGTTCACTTCTATTGGTGATTATTTTAGTTGCAATTCTTTATATCCGCAACTCTTACAAATCACGGAAAGAAAACCAAGCCATAATTGAGAAGTTTTTGAAAGATTATAGAGCTCTCAAGCCCACAAGATATTCTTATGCTGAAATCAAGAGGATTACCAATAAATTTGAAGTCAAGTTAGGGGAAGGACCTTACGGTAGTGTGTTCAAAGGAAACATTTCATCTGATTTCAAAGTTGCAGTGAAGATTCTCAATAATTCGAAAGGCAATGGTGAAGAGTTCATCACTGAAGTTGGAACAATGGGCAAAATCCATCATGTCAACATTATTCGCTTAATGGGCTTCTGTGCTGACGGCTTTAGAAGAGCGTTGGTTTATGAATACTTTCCATATGGTTCATTACAAAATTTCATAAATTCATCAGATAATAGGCAAAACTTTATTGGTTGGAAAAAGCTCCATGGTATAGCTTTAGGTATAGCCAAAGGAATTGAGTACCTTCATCAAGGGTGTAAGCAACGCATACTTCATTTTGACATCAAACCTGGTAATGTTTTATTGGATGATGACTTCACTCCAAAAATATGTGATTCCGGGTTGGTCAAGTTGTGCTTCAAAGGTCGAAGTATAGTGTCAATGACTCATGTTAGAGGAGCATTGGGTTACATAGCTCTAGAAGTTTTCTCACGAAATTTTGGAAATGTGTCTCATAAAGTAGATGTTTATAGTTTTGGGATGTTGCTGCTTGAATTAACAGGGGGAAGAAGGATCACCCATGACACAAAAGAAAATGCTCCCCACATTTACTATCCCAAATGGATCTATAATATTTTAGAAGAAAGGGAGGATGTAAGGATTCATATTGAGGAAGAAGGTGATGCTAAAATTGCAGAAAAGTTGGGAATAGTGGGATTGTGGTGCACTCAGTGGCATCCTGTGGATCGACCATCAATGCAAGTAGTGGTTCAAATGTTAGAAAGAGAAGGAGATAAATTACCAATACCTCCGAATCCTTTTAATGTTGAAGGCATGTCAACAAGAAAAAGGGCCAGCGTGCCCACAAGAAGTCAGATGCAAGGATTAGAAATAATCCAAGAAGTAGATTGA 1932 0.3835 MKDTLERHTLLEKSLGFVYEMRLGTYYLILLLGEGQDMETSLINSFFSVCLLLTLRFSESVGSWNSCPEPETTCGNLPVRFPFRVIGRQPAQCGYPGFDLQCSSANHAILELPGSVHFNVKHIDYKFQTIQLYASGCLSRHLRNFTLLPSPFKFTDRNLADFTIFNCSSPRDGALISTCLSSSTYQVYAVSSYSLIRGLPLLFCSKIFNISFVPPEIFNVENTLHLMWSNPLCKHCESNGAICGFNNGNRGNDTTCFKDPHRGSSNKFVITGSIMGSLLLVIILVAILYIRNSYKSRKENQAIIEKFLKDYRALKPTRYSYAEIKRITNKFEVKLGEGPYGSVFKGNISSDFKVAVKILNNSKGNGEEFITEVGTMGKIHHVNIIRLMGFCADGFRRALVYEYFPYGSLQNFINSSDNRQNFIGWKKLHGIALGIAKGIEYLHQGCKQRILHFDIKPGNVLLDDDFTPKICDSGLVKLCFKGRSIVSMTHVRGALGYIALEVFSRNFGNVSHKVDVYSFGMLLLELTGGRRITHDTKENAPHIYYPKWIYNILEEREDVRIHIEEEGDAKIAEKLGIVGLWCTQWHPVDRPSMQVVVQMLEREGDKLPIPPNPFNVEGMSTRKRASVPTRSQMQGLEIIQEVD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5227g00042 643 ProSiteProfiles Protein kinase domain profile. 329 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5227g00042 643 SMART serkin_6 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5227g00042 643 Gene3D Transferase(Phosphotransferase) domain 1 405 607 - -
Pral5227g00042 643 Pfam Wall-associated receptor kinase galacturonan-binding 67 132 IPR025287 GO:0030247
Pral5227g00042 643 SUPERFAMILY Protein kinase-like (PK-like) 313 601 IPR011009 -
Pral5227g00042 643 Gene3D Phosphorylase Kinase; domain 1 304 403 - -
Pral5227g00042 643 MobiDBLite consensus disorder prediction 608 631 - -
Pral5227g00042 643 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5227g00042 643 FunFam serine/threonine-protein kinase PBS1-like 296 403 - -
Pral5227g00042 643 FunFam PR5-like receptor kinase 404 611 - -
Pral5227g00042 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Pral5227g00042 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 621 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5227g00042 Pral-Chr5227 389444 392017 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5227g00042 70 613 Receptor kinase-like Gene Family AT1G66910 36.111 2.01e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral5227g00042 Pkinase 4.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5227g00042 - - qsa:O6P43_019907 687.952