Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5227g00001 ATGGCCATAAGGCCCTTCCATTTCACCTTCTCGCGGGATAGATTCTTTTCTCTTCTGCGCACTCCTCCGTTTTCTTGTTCTTGTTCTTCTTCTTGTCCTGCTTCTTTCTCTCCCTGGATTTATAAACTCTCGTTGTCCTCTCAATTGTTTTTCCCCTTTTCTGTGTTCCGGCACTTCGCGGCGTTAGCAGCAACTCCGTTCTCAAGCGCTCGCCAGTGCTATCCGCCACCGCAACCACACGACGACCGACTGCGGTCGTTGTCGCCATCCAACACTCTGGCGCAGAAGATTGGAAAATCCATTCGCCGACCGGGCGCTGCCTCGAAGGCGAGGGTTTATGCCGATGTCAACGTTGTCCGTCCTAAGGAGTACTGGGACTATGAGTCGCTTACCGTCCAGTGGGGGGGGCAAGATGATTACGAGGTTTCAAGGAAGGTGGGAAGGGGGAAGTACAGTGAGGTGTTTGAGGGCGTTCACTGCACAGATAATGAAAAGTGCATCATTAAAATTCTGAAGCCAGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAATCTTTGCGGAGGGCCCAATATTGTGAAGTTGCTTGACATTGTCAGGGATCAGCAGTCAAAGACGCCAAGCCTTATTTTTGAATATGTTAACAACACTGATTTTAAAGTGCTCTATCCCACACTGTCGGACTATGACATACGATATTACATCTATGAGCTTCTAAAGGCCCTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTCTATCATCCCGGTAAAGAGTATAATGTTCGAGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGCATGATTTTTCGTAAAGAGCCATTCTTTTATGGACATGATAATTATGATCAACTGGTCAAAATTGCAAAAGTACTTGGGACTGATGAATTGTATGCATATTTGAACAAGTATCGGATAGAGTTGGACCCGAATCTTGCAGCACTTGTTGGGAGGCATAGTCGCAAGCCATGGACGAAGTTCATTAACGTTGATAATCAACATTTGGCTGCTCCTGAGGCTATTGACTTTGTTGACAAGTTACTGCGATATGATCACCAAGAACGACCCACCGCAAAAGAAGCCATGAGCCATCCTTACTTCAATCCTGTTAGAAATGCAGAAAGCAGTCGATCTCGTACTCATTAA 1320 0.4492 MAIRPFHFTFSRDRFFSLLRTPPFSCSCSSSCPASFSPWIYKLSLSSQLFFPFSVFRHFAALAATPFSSARQCYPPPQPHDDRLRSLSPSNTLAQKIGKSIRRPGAASKARVYADVNVVRPKEYWDYESLTVQWGGQDDYEVSRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELYAYLNKYRIELDPNLAALVGRHSRKPWTKFINVDNQHLAAPEAIDFVDKLLRYDHQERPTAKEAMSHPYFNPVRNAESSRSRTH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5227g00001 439 SUPERFAMILY Protein kinase-like (PK-like) 113 429 IPR011009 -
Pral5227g00001 439 ProSiteProfiles Protein kinase domain profile. 140 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5227g00001 439 MobiDBLite consensus disorder prediction 419 439 - -
Pral5227g00001 439 FunFam Casein kinase II subunit alpha 217 428 - -
Pral5227g00001 439 SMART serkin_6 140 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5227g00001 439 Pfam Protein kinase domain 140 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5227g00001 439 Gene3D Phosphorylase Kinase; domain 1 140 216 - -
Pral5227g00001 439 CDD STKc_CK2_alpha 121 425 IPR045216 GO:0004674|GO:0006468
Pral5227g00001 439 Gene3D Transferase(Phosphotransferase) domain 1 217 425 - -
Pral5227g00001 439 PANTHER CASEIN KINASE II SUBUNIT ALPHA 104 435 IPR045216 GO:0004674|GO:0006468
Pral5227g00001 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Pral5227g00001 439 FunFam Casein kinase II subunit alpha 126 216 - -
Pral5227g00001 439 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5227g00001 Pral-Chr5227 40716 47549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5227g00001 136 426 Core Cell Cycle Gene Families AT1G76540 29.874 8.18e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pral5227g00001 Pkinase 7.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5227g00001 K03097 - qsa:O6P43_024562 718.768