Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5226g00003 ATGGAGACTTATTTACAAGAAAACTTTGAAGTGAAGTCCAAGAACTCATCTGAAGAGGTTCTTCAGAATTGGAGAAAACTCTGTGGGATTGTTAAGAATCCCAAAAGGAGGTTTCGCTTCACTGCTAATCTCTCCAAGCGAGGCGAAGCCGCTGCCATGCGTCGCACCAATCAGGAGAAATTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGTGCAACCAAGTGATTACAAAGTACCTGAAGAAATTAGAGAAGCAGGCTTTCAGATCTGTGCGGATGAATTGGAGTCTATTGTTGAAAGACACGACATAAAGAAGCTAAAATATCATGGTGGGGTTGATGGTATCTCAGAAAAGCTTTCTACCTCAACCACTGATGGTATTAGCAATGACTCCGACCAACTTATCAAGAGACAAGAAATTTACGGAATCAACAAATTCATCGAGAGCGAAGCCCGTAGTTTCTGGGTTTTTGTTTTCGAAGCCCTTCAAGACATGACGCTAATGATCCTAGGCGTGTGTGCTCTTGTGTCTCTCGTCATTGGAATAGCGACAGAAGGATGGCCCAGAGGAGCTCACGATGGCCTAGGAATCGTCGTAAGTATCCTTCTGGTCGTGTTTGTGACAGCGACAAGTGATTATCGCCAATCATTACAGTTCAGGGATTTAGACAAGGAGAAAAAAAAGATTGCCATGCAGGTCACAAGAAATGGGTATAGGAAAAAAATGTCGATATATGATTTAGTTCCCGGCGACATTGTGCATCTTGCTATAGGAGATCAAGTCCCCACAGATGGACTCTTTGTTTCAGGATTCTCCGTGTTGATCGACGAGTCAAGTTTAACTGGAGAGAGCGAGCCAGTGATGGTGAATTCCCAGAATCCATTTCTTCTCTCTGGAACTAAGGTTCAAGATGGATCCTGCAAGATGTTGGTCACAACTGTAGGAATGAGAACTCAATGGGGTAAATTAATGGCTACATTGAGTGAAGGTGGAGACGATGAAACGCCATTGCAGGTGAAACTGAATGGAGTGGCCACTATCATAGGGAAGATAGGCCTATTCTTCGCGGTTCTTACTTTTGTAGTTTTGATGAAGGGACTTATGGCACGTCGACGACATGAAGGAAGATTTTGGACTGTGTCTGGGGACGACGCCATGGAGATGTTGGAATTCTTCGCCGTTGCAGTTACAATCGTTGTCGTTGCTGTCCCTGAAGGGTTGCCATTAGCTGTGACGCTGAGCCTTGCGTTTGCTATGAAGAAAATGATGAACGACAAAGCCCTTGTTCGACATTTGGCTGCCTGCGAGACCATGGGTTCAGCGACAAGTATATGTAGTGACAAGACAGGAACGTTGACGACCAACCGCATGACTGTCGTCAAAACATGCATTTGTATGAACATCAAGGAACTGACCAATGAGGAGAAGGATTCTTCTAGTTTTCGCTCTGAGTTACCAGATTTTGCTATGAAATTGTTACTAGAGTCGATATTTAATAATACTGGAGGAGAGGTTGTGACTAAAAGAAAAAGCAAAAGGAAACGTGAGATCCTGGGGACGCCTACAGAAGCTGCAATATTGGAGTATGGGCTGTCACAAGGTGGGGATTTTCAGAAAGAGAGAAAAGCATGTAAGATTGTGAAAGTTGAGCCATTCAACTCAGAAAAGAAAAGGATGGGTGTAGTTGTGGAGTTGCCTGAAGGAAATTTTCGAGCTCATTGTAAAGGTGCTTCTGAGATCGTTCTAGCTGCTTGTGACAAAGTGATCAATTCAAACGGAGAGGTCGTACCCCTTGATGCAGAGAAAAGTGATTATCTTAAAGAAACAATCCACTCATTTGCTTGTGAGGCACTTAGAACTCTATGCCTTGCCTATGTGGAATTAGGCCCAGATTTCAGAGAGAAGACTCAGGAGGAAATGTTTGAACTAATTCCCAAAATTCAGGTTATGGCCAGATCCTCACCACTAGATAAGCATACTTTAGTGAAACAACTGCGTACTACGTTTGGAGAAGTTGTGGCTGTAACTGGTGATGGAACGAACGACGCCCCTGCCCTTCATGAAGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGCGCTGATGTCATAATTCTGGATGATAATTTCTCTACTATAGTGACAGTGGCAAAATGGGGACGTTCAGTTTACATAAACATTCAAAAATTTGTCCAGTTTCAGCTGACAGTTAACGTGGTTGCCTTACTAGTGAACTTCAGTTCAGCATGCACAACAGGAAGTGCACCTCTTACGGCAGTTCAATTATTGTGGGTGAACATGATAATGGACACACTTGGAGCACTTGCCCTGGCAACTGAACCTCCAAACGACGAACTAATGAAACGTTCACCAGTGGGAAGGCGGGGAAGTTTCATCAGCAATGTTATGTGGAGGAATATCTTAGGCCAATCTCTATATCAAGTCCTAGTGATATGGATTCTCCAGGCCGAAGGGAAATGGATCTTTGGAATGAAGGGTCCAGATTCTGATATCTTGTTAAACACACTTATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAACGAGATAAGCTCACGCGAGATGGAGGAAATAGATGTTTTTAAGGGCATATTGGATAATCATGTTTTCGTGGCTGTCATAAGTGTCACTGTTTTGTTTCAAATAATAATAGTTGAGTATTTAGGAACCTACGCTAACACCACACCCCTTGCTCCCATCTACTGGTTGTTTAGCGTTTCCATTGGATATTTAGGCATGCCCATTGCTGCTCACTTAAAGAAGATCCCTGTCTGA 2835 0.4328 METYLQENFEVKSKNSSEEVLQNWRKLCGIVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYKVPEEIREAGFQICADELESIVERHDIKKLKYHGGVDGISEKLSTSTTDGISNDSDQLIKRQEIYGINKFIESEARSFWVFVFEALQDMTLMILGVCALVSLVIGIATEGWPRGAHDGLGIVVSILLVVFVTATSDYRQSLQFRDLDKEKKKIAMQVTRNGYRKKMSIYDLVPGDIVHLAIGDQVPTDGLFVSGFSVLIDESSLTGESEPVMVNSQNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVLTFVVLMKGLMARRRHEGRFWTVSGDDAMEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNRMTVVKTCICMNIKELTNEEKDSSSFRSELPDFAMKLLLESIFNNTGGEVVTKRKSKRKREILGTPTEAAILEYGLSQGGDFQKERKACKIVKVEPFNSEKKRMGVVVELPEGNFRAHCKGASEIVLAACDKVINSNGEVVPLDAEKSDYLKETIHSFACEALRTLCLAYVELGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACTTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRRGSFISNVMWRNILGQSLYQVLVIWILQAEGKWIFGMKGPDSDILLNTLIFNTFVFCQVFNEISSREMEEIDVFKGILDNHVFVAVISVTVLFQIIIVEYLGTYANTTPLAPIYWLFSVSIGYLGMPIAAHLKKIPV 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5226g00003 944 PANTHER CATION TRANSPORTING ATPASE 71 633 - -
Pral5226g00003 944 Pfam Cation transporting ATPase, C-terminus 768 941 IPR006068 -
Pral5226g00003 944 FunFam Calcium-transporting ATPase 16 76 - -
Pral5226g00003 944 SUPERFAMILY Calcium ATPase, transduction domain A 238 332 IPR008250 -
Pral5226g00003 944 Gene3D - 695 943 - -
Pral5226g00003 944 SUPERFAMILY HAD-like 632 731 IPR036412 -
Pral5226g00003 944 Gene3D - 211 310 - -
Pral5226g00003 944 NCBIfam calcium-translocating P-type ATPase, PMCA-type 105 638 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pral5226g00003 944 Pfam E1-E2 ATPase 236 430 - -
Pral5226g00003 944 PRINTS Sodium/potassium-transporting ATPase signature 202 222 - -
Pral5226g00003 944 PRINTS Sodium/potassium-transporting ATPase signature 445 466 - -
Pral5226g00003 944 PRINTS Sodium/potassium-transporting ATPase signature 579 597 - -
Pral5226g00003 944 Pfam Cation transporter/ATPase, N-terminus 115 184 IPR004014 -
Pral5226g00003 944 FunFam Calcium-transporting ATPase 700 944 - -
Pral5226g00003 944 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Pral5226g00003 944 NCBIfam HAD-IC family P-type ATPase 204 476 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00003 944 NCBIfam HAD-IC family P-type ATPase 653 763 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00003 944 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 943 IPR023298 -
Pral5226g00003 944 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Pral5226g00003 944 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Pral5226g00003 944 PRINTS P-type cation-transporting ATPase superfamily signature 707 719 - -
Pral5226g00003 944 PRINTS P-type cation-transporting ATPase superfamily signature 683 702 - -
Pral5226g00003 944 FunFam Calcium-transporting ATPase 215 335 - -
Pral5226g00003 944 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Pral5226g00003 944 Pfam Cation transport ATPase (P-type) 514 595 - -
Pral5226g00003 944 FunFam Calcium-transporting ATPase 462 654 - -
Pral5226g00003 944 Gene3D - 512 652 IPR023299 GO:0000166
Pral5226g00003 944 Gene3D - 167 479 - -
Pral5226g00003 944 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 639 IPR023299 GO:0000166
Pral5226g00003 944 Gene3D - 16 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5226g00003 Pral-Chr5226 1828 5702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5226g00003 636 944 Primary Pumps ATPases AT4G37640 85.761 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5226g00003 K01537 - csv:101212315 1239.94