Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5226g00001 ATGGAGACTTATTTACAAGAAAACTTTGAAGTGAAGTCCAAGAACTCATCTGAAGAGGTTCTTCAGAATTGGAGAAAACTCTGTGGGATTGTTAAGAATCCCAAAAGGAGGTTTCGCTTCACTGCTAATCTCTCCAAGCGAGGCGAAGCCGCTGCCATGCGTCGCACCAATCAGGAGAAATTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGAGTTGAGAGAGTTTCACAGAGAGATGCATATATTCATAAAACAAATTTCATTACTTGCAATTACGCCTGCAGGTGTGCAACCAAGTGATTACAAAGTACCTGAAGAAATTAGAGAAGCAGGCTTTCAGATCTGTGCGGATGAATTGGAGTCTATTGTTGAAAGACACGACATAAAGAAGCTAAAATATCATGGTGGGGTTGATGGTATCTCAGAAAAGCTTTCTACCTCAACCACTGATGGTATTAGCAATGACTCCGACCAACTTATCAAGAGACAAGAAATTTACGGAATCAACAAATTCATCGAGAGCGAAGCCCGTAGTTTCTGGGTTTTTGTTTTCGAAGCCCTTCAAGACATGACGCTAATGATCCTAGGCGTGTGTGCTCTTGTGTCTCTCGTCATTGGAATAGCGACAGAAGGATGGCCCAGAGGAGCTCACGATGGCCTAGGAATCGTCGTAAGTATCCTTCTGGTCGTGTTTGTGACAGCGACAAGTGATTATCGCCAATCATTACAGTTCAGGGATTTAGACAAGGAGAAAAAAAAGATTGCCATGCAGGTCACAAGAAATGGGTATAGGAAAAAAATGTCGATATATGATTTAGTTCCCGGCGACATTGTGCATCTTGCTATAGGAGATCAAGTCCCCACAGATGGACTCTTTGTTTCAGGATTCTCCGTGTTGATCGACGAGTCAAGTTTAACTGGAGAGAGCGAGCCAGTGATGGTGAATTCCCAGAATCCATTTCTTCTCTCTGGAACTAAGGTTCAAGATGGATCCTGCAAGATGTTGGTCACAACTGTAGGAATGAGAACTCAATGGGGTAAATTAATGGCTACATTGAGTGAAGGTGGAGACGATGAAACGCCATTGCAGGTGAAACTGAATGGAGTGGCCACTATCATAGGGAAGATAGGCCTATTCTTCGCGGTTCTTACTTTTGTAGTTTTGATGAAGGGACTTATGGCACGTCGACGACATGAAGGAAGATTTTGGACTGTGTCTGGGGACGACGCCATGGAGATGTTGGAATTCTTCGCCGTTGCAGTTACAATCGTTGTCGTTGCTGTCCCTGAAGGGTTGCCATTAGCTGTGACGCTGAGCCTTGCGTTTGCTATGAAGAAAATGATGAACGACAAAGCCCTTGTTCGACATTTGGCTGCCTGCGAGACCATGGGTTCAGCGACAAGTATATGTAGTGACAAGACAGGAACGTTGACGACCAACCGCATGACTGTCGTCAAAACATGCATTTGTATGAACATCAAGGAACTGACCAATGAGGAGAAGGATTCTTCTAGTTTTCGCTCTGAGTTACCAGATTTTGCTATGAAATTGTTACTAGAGTCGATATTTAATAATACTGGAGGAGAGGTTGTGACTAAAAGAAAAAGCAAAAGGAAACGTGAGATCCTGGGGACGCCTACAGAAGCTGCAATATTGGAGTATGGGCTGTCACAAGGTGGGGATTTTCAGAAAGAGAGAAAAGCATGTAAGATTGTGAAAGTTGAGCCATTCAACTCAGAAAAGAAAAGGATGGGTGTAGTTGTGGAGTTGCCTGAAGGAAATTTTCGAGCTCATTGTAAAGGTGCTTCTGAGATCGTTCTAGCTGCTTGTGACAAAGTGATCAATTCAAACGGAGAGGTCGTACCCCTTGATGCAGAGAAAAGTGATTATCTTAAAGAAACAATCCACTCATTTGCTTGTGAGGCACTTAGAACTCTATGCCTTGCCTATGTGGAATTGGAAAATGGGTTCTCTGCTGAAGATCCCATTCCTATTTCTGGATATACTTGTATAGGAATCATTGGTATCAAGGATCCTGTTCGTCCTGGTGTTAGGGAATCTGTTGCAATCTGTCGCTCAGCAGGAATAAGAGTAAGAATGGTCACAGGTGACAATATTAATACTGCAAAGGCTATAGCCAAAGAATGTGGGATTTTAACAGACGATGGCATAGCAATAGAAGGCCCAGATTTCAGAGAGAAGACTCAGGAGGAAATGTTTGAACTAATTCCCAAAATTCAGGTTATGGCCAGATCCTCACCACTAGATAAGCATACTTTAGTGAAACAACTGCGTACTACGTTTGGAGAAGTTGTGGCTGTAACTGGTGATGGAACGAACGACGCCCCTGCCCTTCATGAAGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGCGCTGATGTCATAATTCTGGATGATAATTTCTCTACTATAGTGACAGTGGCAAAATGGGGACGTTCAGTTTACATAAACATTCAAAAATTTGTCCAGTTTCAGCTGACAGTTAACGTGGTTGCCTTACTAGTGAACTTCAGTTCAGCATGCACAACAGGAAGTGCACCTCTTACGGCAGTTCAATTATTGTGGGTGAACATGATAATGGACACACTTGGAGCACTTGCCCTGGCAACTGAACCTCCAAACGACGAACTAATGAAACGTTCACCAGTGGGAAGGCGGGGAAGTTTCATCAGCAATGTTATGTGGAGGAATATCTTAGGCCAATCTCTATATCAAGTCCTAGTGATATGGATTCTCCAGGCCGAAGGGAAATGGATCTTTGGAATGAAGGGTCCAGATTCTGATATCTTGTTAAACACACTTATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAACGAGATAAGCTCACGCGAGATGGAGGAAATAGATGTTTTTAAGGGCATATTGGATAATCATGTTTTCGTGGCTGTCATAAGTGTCACTGTTTTGTTTCAAATAATAATAGTTGAGTATTTAGGAACCTACGCTAACACCACACCCCTTGCTCCCATCTACTGGTTGTTTAGCGTTTCCATTGGATATTTAGGCATGCCCATTGCTGCTCACTTAAAGAAGATCCCTGTCTGA 3132 0.4294 METYLQENFEVKSKNSSEEVLQNWRKLCGIVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGELREFHREMHIFIKQISLLAITPAGVQPSDYKVPEEIREAGFQICADELESIVERHDIKKLKYHGGVDGISEKLSTSTTDGISNDSDQLIKRQEIYGINKFIESEARSFWVFVFEALQDMTLMILGVCALVSLVIGIATEGWPRGAHDGLGIVVSILLVVFVTATSDYRQSLQFRDLDKEKKKIAMQVTRNGYRKKMSIYDLVPGDIVHLAIGDQVPTDGLFVSGFSVLIDESSLTGESEPVMVNSQNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVLTFVVLMKGLMARRRHEGRFWTVSGDDAMEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNRMTVVKTCICMNIKELTNEEKDSSSFRSELPDFAMKLLLESIFNNTGGEVVTKRKSKRKREILGTPTEAAILEYGLSQGGDFQKERKACKIVKVEPFNSEKKRMGVVVELPEGNFRAHCKGASEIVLAACDKVINSNGEVVPLDAEKSDYLKETIHSFACEALRTLCLAYVELENGFSAEDPIPISGYTCIGIIGIKDPVRPGVRESVAICRSAGIRVRMVTGDNINTAKAIAKECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACTTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRRGSFISNVMWRNILGQSLYQVLVIWILQAEGKWIFGMKGPDSDILLNTLIFNTFVFCQVFNEISSREMEEIDVFKGILDNHVFVAVISVTVLFQIIIVEYLGTYANTTPLAPIYWLFSVSIGYLGMPIAAHLKKIPV 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5226g00001 1043 NCBIfam calcium-translocating P-type ATPase, PMCA-type 130 1043 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pral5226g00001 1043 PANTHER CATION TRANSPORTING ATPASE 104 1042 - -
Pral5226g00001 1043 PRINTS H+-transporting ATPase (proton pump) signature 782 798 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00001 1043 PRINTS H+-transporting ATPase (proton pump) signature 638 656 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00001 1043 PRINTS H+-transporting ATPase (proton pump) signature 814 839 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00001 1043 SFLD p-type atpase 459 834 IPR044492 -
Pral5226g00001 1043 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Pral5226g00001 1043 SUPERFAMILY Calcium ATPase, transduction domain A 263 357 IPR008250 -
Pral5226g00001 1043 PRINTS P-type cation-transporting ATPase superfamily signature 477 491 - -
Pral5226g00001 1043 PRINTS P-type cation-transporting ATPase superfamily signature 806 818 - -
Pral5226g00001 1043 PRINTS P-type cation-transporting ATPase superfamily signature 782 801 - -
Pral5226g00001 1043 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Pral5226g00001 1043 PRINTS P-type cation-transporting ATPase superfamily signature 679 690 - -
Pral5226g00001 1043 PRINTS P-type cation-transporting ATPase superfamily signature 701 711 - -
Pral5226g00001 1043 Gene3D - 474 827 IPR023214 -
Pral5226g00001 1043 Gene3D - 487 686 IPR023299 GO:0000166
Pral5226g00001 1043 FunFam Calcium-transporting ATPase 240 360 - -
Pral5226g00001 1043 FunFam Calcium-transporting ATPase 799 1043 - -
Pral5226g00001 1043 Pfam Cation transporter/ATPase, N-terminus 140 209 IPR004014 -
Pral5226g00001 1043 NCBIfam HAD-IC family P-type ATPase 574 727 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00001 1043 NCBIfam HAD-IC family P-type ATPase 229 501 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00001 1043 NCBIfam HAD-IC family P-type ATPase 752 862 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5226g00001 1043 FunFam Calcium-transporting ATPase 487 686 - -
Pral5226g00001 1043 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 483 691 IPR023299 GO:0000166
Pral5226g00001 1043 Gene3D - 192 1029 - -
Pral5226g00001 1043 SUPERFAMILY HAD-like 476 887 IPR036412 -
Pral5226g00001 1043 FunFam Calcium-transporting ATPase 16 76 - -
Pral5226g00001 1043 Pfam E1-E2 ATPase 261 455 - -
Pral5226g00001 1043 Gene3D - 16 76 - -
Pral5226g00001 1043 Gene3D - 163 360 - -
Pral5226g00001 1043 SUPERFAMILY Calcium ATPase, transmembrane domain M 140 1042 IPR023298 -
Pral5226g00001 1043 SFLD Haloacid Dehalogenase 459 834 - -
Pral5226g00001 1043 ProSitePatterns E1-E2 ATPases phosphorylation site. 479 485 IPR018303 -
Pral5226g00001 1043 Pfam Cation transporting ATPase, C-terminus 867 1040 IPR006068 -
Pral5226g00001 1043 Pfam Cation transport ATPase (P-type) 539 620 - -
Pral5226g00001 1043 CDD P-type_ATPase_Ca_PMCA-like 168 915 - -
Pral5226g00001 1043 FunFam Calcium-transporting ATPase 675 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5226g00001 Pral-Chr5226 1828 5702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5226g00001 1 1043 Primary Pumps ATPases AT4G37640 78.448 0.0 1681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5226g00001 K01537 - gmx:100776926 1676.37