Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5224g00005 ATGGCTTCAACAATTCATTATTCCATAAACGGCAAAGTGAATCCACCTGAAGCCAACACAAAAGTTCCTCCCAAAAAGGGAGCTTGGACGCCACAGGAAGACGCCAAACTAGCTGAAGCAATCGCACTTCATGGAGCAAAAAGGTGGAAGTTCATTGCAGCTAGAGCAGGTCTGAGTAGGAATGGGAAGAGTTGCAGACTGAGGTGGTTGAACTATCTGAGACCTAATATCAAGAGGGGGAACATATCAGAACAAGAAGAGGATTTGATACTTCGGCTTCACAAACTCCTCGGAAACAGGTGGTCTTTGATTGCTGGAAGGTTACCAGGACGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGCGCAAGAAAATGAAGCTGCAGAAAGAGAAGAAGATCAATCAAATCGAATGTTCAAGGAGAGAAGATCACAAAGACGAACAAGGGGTGGCGATGGTGGAAGATATCCAGCTTAATCCTGCAGAAGAATCAGAGCCAACAGTAGAAGAAGGTGATCAAGAATATTCAACCAAGTCCCATTTTTATGAGAATGGATTCTTTAGTTCCTTCGATGAAGGTCCCTTAAATTTGGAGTGGGTTAGTAGATTCCTAGAATTGAACTAG 633 0.4265 MASTIHYSINGKVNPPEANTKVPPKKGAWTPQEDAKLAEAIALHGAKRWKFIAARAGLSRNGKSCRLRWLNYLRPNIKRGNISEQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLRKKMKLQKEKKINQIECSRREDHKDEQGVAMVEDIQLNPAEESEPTVEEGDQEYSTKSHFYENGFFSSFDEGPLNLEWVSRFLELN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5224g00005 210 Gene3D - 25 78 - -
Pral5224g00005 210 Coils Coil 125 145 - -
Pral5224g00005 210 MobiDBLite consensus disorder prediction 1 15 - -
Pral5224g00005 210 CDD SANT 28 73 IPR001005 -
Pral5224g00005 210 CDD SANT 83 124 IPR001005 -
Pral5224g00005 210 FunFam MYB-related transcription factor 25 78 - -
Pral5224g00005 210 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Pral5224g00005 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Pral5224g00005 210 Gene3D - 82 154 - -
Pral5224g00005 210 SMART sant 25 75 IPR001005 -
Pral5224g00005 210 SMART sant 78 126 IPR001005 -
Pral5224g00005 210 MobiDBLite consensus disorder prediction 1 26 - -
Pral5224g00005 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 73 IPR017930 -
Pral5224g00005 210 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Pral5224g00005 210 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 20 153 - -
Pral5224g00005 210 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Pral5224g00005 210 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Pral5224g00005 210 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5224g00005 Pral-Chr5224 33248 34699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5224g00005 20 193 MYB Transcription Factor Family AT3G13540 50.265 3.00e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5224g00005 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5224g00005 K09422 - mnt:21384921 235.728