Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5223g00001 ATGAAAGATCAGGGCTCCAAGTGCGGCGACTCTGCCATCAAATCTCTCTGTGATTCTACTTTTTCTTCTTCCTCCAAGCAGGTCAGGCGCTTCTCTAACGCCTTAGATTCTCTCGCCTTCAAGGCTTCCAACTCTGACAAACTCAAGCAGGCTGAAGAGTCCCTCAGAACCATCATACCTATTGATAATTTAGGTCCTGTAGATACCCGCACAACATCTCCTATTCATAGATCCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAATAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAAATAGGACTTTTCAGTGGAGCTGGGGTGGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGGGGAGTAGGTGAATGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCTCGAAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTCAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGATTTGTCCAAGCGGGATCCGAAGTATCCGCCTTATTGGGTCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATATACCTGCAGACGATTTGACCGATCCTACTCCTGCCATAACATTTGCCCATTTAGATGTTACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAACAGTAGATCCTTTAGATTCAATGTCAACTATGCTACAACCTCGGATCGTTGGCGAAGAACACTATGAAACTGCACAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTAGAGCTATCCTTGGGTTAGACGAATTATCCAAAGAGGATTGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCATTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCTGGGGAAATATGTTGGTCCAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCTCGAACAGGCCTTTTATTTGGTAGGTAACATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAATTGAAGAAATGA 1326 0.411 MKDQGSKCGDSAIKSLCDSTFSSSSKQVRRFSNALDSLAFKASNSDKLKQAEESLRTIIPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKIVDLLAPYRRGGKIGLFSGAGVGKTVLIMELINNIAKAHGGVSVFGGVGECTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPLEARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYIPADDLTDPTPAITFAHLDVTTVLSRGLAAKGIYPTVDPLDSMSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIRAILGLDELSKEDCLTVARARKIEHFLSQPFFVAEVFTGSLGKYVGPAETIRGFKLILSGELDGLLEQAFYLVGNIDEATAKATNLEMESKLKK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5223g00001 441 SMART AAA_5 107 299 IPR003593 GO:0016887
Pral5223g00001 441 CDD F1-ATPase_beta_CD 60 320 - -
Pral5223g00001 441 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 95 315 IPR000194 GO:0005524
Pral5223g00001 441 CDD ATP-synt_F1_beta_C 322 429 - -
Pral5223g00001 441 Hamap ATP synthase subunit beta [atpB]. 4 433 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pral5223g00001 441 PANTHER ATP SYNTHASE 60 439 - -
Pral5223g00001 441 NCBIfam F0F1 ATP synthase subunit beta 60 433 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pral5223g00001 441 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 318 433 - -
Pral5223g00001 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 320 IPR027417 -
Pral5223g00001 441 Gene3D - 56 317 IPR027417 -
Pral5223g00001 441 FunFam ATP synthase subunit beta 318 437 - -
Pral5223g00001 441 Gene3D - 318 441 IPR024034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5223g00001 Pral-Chr5223 10975 17369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5223g00001 72 379 Primary Pumps ATPases(2) AT1G78900 27.829 5.98e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5223g00001 K02112 - qsa:O6P43_035522 699.123