Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5221g00004 ATGAAGAGAAAGTCCAGTTCAGGTCGCCAAAAGATCCCAATTGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACCTTCTCAAAGCGTCGTTCTGGACTTTTCAAGAAAGCCAGTGAGCTTTGCACGCTCTGTGGTGTTGAAATCGCCATCATCGTCTTCTCTCCGGCCGACAAGGCCTTCTCCTTCGGCCATCCGGAAGTGGAATCCATCGTCGATCGATATATCAGTCGAAACCCCACGTCGGAATCCGGCCCTCACCCGCTGGTGGAGGCTCACCGGAATGCAAACGTCCGGGAGCTCAACATGCAGCTGACACAGCTTCTAGGGCAACTGGAAATGGAGAGGAAGCGAGGAGAAGAACTGGACCAGGTGAGGAAGGCGAGGCAGAGACAGTTCTGGTGGGAAAACCCTATTGAAGAATTAGGGTTTAATGAGTTGCAGCAAGTGAGGGTTTCAATGGAGGAACTGAAGAAGGAGTTAGGGAAAATGGCGAGCAAGATGTTAATGGAGCATAACAGTTTGGCTACTGATTCATCGGTGATTGTTGGAGGAGGACCCGGTGGACTTGGACGTTATATTAATAATGATGTCTTCGAGAATAAACATGTTGTTATGAACAACATTAATGCTGCTTCGTCCAGTAATATTCTTCCTCCCCAACATGCCTATAACAATCTCAATTGTAGGCATGGATATCTATGA 705 0.4738 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIVDRYISRNPTSESGPHPLVEAHRNANVRELNMQLTQLLGQLEMERKRGEELDQVRKARQRQFWWENPIEELGFNELQQVRVSMEELKKELGKMASKMLMEHNSLATDSSVIVGGGPGGLGRYINNDVFENKHVVMNNINAASSSNILPPQHAYNNLNCRHGYL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5221g00004 234 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Pral5221g00004 234 Coils Coil 147 167 - -
Pral5221g00004 234 Gene3D - 88 180 - -
Pral5221g00004 234 PANTHER MADS BOX PROTEIN 9 162 - -
Pral5221g00004 234 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Pral5221g00004 234 Coils Coil 95 118 - -
Pral5221g00004 234 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Pral5221g00004 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Pral5221g00004 234 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Pral5221g00004 234 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Pral5221g00004 234 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Pral5221g00004 234 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Pral5221g00004 234 SUPERFAMILY SRF-like 8 82 IPR036879 GO:0003677|GO:0046983
Pral5221g00004 234 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5221g00004 Pral-Chr5221 42697 43401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5221g00004 6 166 Type I MADS-box Gene Family AT2G24840 55.758 1.09e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5221g00004 SRF-TF 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5221g00004 - - gmx:100793705 280.411