Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5218g00007 ATGAAGATTCAGTGCAGTGTGTGTGAAGCTTCGGAGGCGAAGGTTTTGTGTTGCGCCGACGACGCGGCGCTGTGTTGGGAATGTGACGAGAAGGTCCATGCCGCTAACAAGCTTGCCGGCAAGCACGAGAGAGTACCTCTTTCTTCCTCTGCCTCTCACATGCCCAAATGTGATATTTGTCAGGAATCCTTTGGCTATTTCTTCTGTCTAGAGGACAGGGCTTTATTCTGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTCTCGGCTCATCAGAGGTTTCTGCTGGCTGGTATAAGAGTTGGACTTGAAGCTACTGAGCCTGGTGCTTCCTCGTCTTCTGCCAAGTCACAGTCTGAGGAGAAGATGTCAGGTACAAAATCCTCTTCTGCCTGTAGAAGGGTTTCCTCAGTACCTGAGTCATCTGAACACAACGAAGTTGTACCTTGCCAAGGGGGAGGAGATGGGCAGTTTCCACCTTCTAAGGTGTCTTATGGTGGTGGCTCAACTCCTGGAAACATATCAAATTGGTCCATGGATGAATTTTTTGGTTTAAATGAATTCAGTCAGAATTACAATTGCATGAACAATGAACCATCCAAGGCTGGCAGTGGTAAGCCTGGGGATTCTGATTCTCCTGGTTTTAAATCTGGCGAAGAGGAAATGGACGAGGACGACGACGATAATGACTGTTTGGGGCGATTTTCGGATTCATCTTGGATTGTTCCTCAGATTCCTTCCCCTCCTACAGCTTCAGGATTATATTGGCCTAAAGATACTCAATATACACCTGATAATGCTATGTTAGATCATGTTCCAGACTTGTGTTTTTCTGACTCACAACAATTCATTGGAGCTCAGAATCGTCGTATTTTATCAAGGCGACGGAGGCAACCATAA 909 0.4598 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHERVPLSSSASHMPKCDICQESFGYFFCLEDRALFCRKCDVAIHTANSYVSAHQRFLLAGIRVGLEATEPGASSSSAKSQSEEKMSGTKSSSACRRVSSVPESSEHNEVVPCQGGGDGQFPPSKVSYGGGSTPGNISNWSMDEFFGLNEFSQNYNCMNNEPSKAGSGKPGDSDSPGFKSGEEEMDEDDDDNDCLGRFSDSSWIVPQIPSPPTASGLYWPKDTQYTPDNAMLDHVPDLCFSDSQQFIGAQNRRILSRRRRQP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5218g00007 302 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pral5218g00007 302 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pral5218g00007 302 CDD Bbox1_BBX-like 5 47 - -
Pral5218g00007 302 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral5218g00007 302 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 266 - -
Pral5218g00007 302 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Pral5218g00007 302 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Pral5218g00007 302 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral5218g00007 302 MobiDBLite consensus disorder prediction 198 261 - -
Pral5218g00007 302 MobiDBLite consensus disorder prediction 110 147 - -
Pral5218g00007 302 FunFam B-box zinc finger protein 22 1 93 - -
Pral5218g00007 302 CDD Bbox1_BBX-like 56 99 - -
Pral5218g00007 302 Gene3D Classic Zinc Finger 1 93 - -
Pral5218g00007 302 MobiDBLite consensus disorder prediction 110 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5218g00007 Pral-Chr5218 40823 42757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5218g00007 1 300 C2C2-CO-like Transcription Factor Family AT1G78600 47.748 5.01e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral5218g00007 zf-B_box 7.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5218g00007 - - pcin:129316255 469.929