Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5216g00012 ATGGTGTTTGTTAGTGTGGAGTTTAAAATGTGTGTTGGGAAGACTGGGCCAAGTAGAGAACCCCGCCGCGCAGTAGCAGCCACCTTTGTTTGTGGAGATTATTCCAAATCCTTGCGATGGCGCGTGATGTTGATGGAGTTGGGTGTTCTTCAAGTTCTTCTGCCTCAACTAAGAGATGGAAGATTAAGAACTTTTCGGGATGAGGAAGAACTTGAAAGGGGAGAATATATTAATCCAGGTTTAGTACAAGCAATTGATGAATCTCGTTCTGCAATTGTGGTGCTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATCCTGCAGTTAAGGGAAGAGTCGAGTCTTCGAGTATTTCCTATATTTTACGGTGTAGATCCCTCTAATGTTAGGAAACAAAAGGGATGTTTTGCAGAGGCATTCATAAAGCATGAAGAAAGATTTGTACAAGACAAAATGAAAGTGCGAAAATGGAGGGATGCTTTAGAAAAAGTTGCTACTATATCTGGTTGGGACTCACAAAATTGGCATGAAATGGAATTCATTGAAAGCATTGCTGAAGAAATCATGTCAAAGTTACTTGATGATGAATTGCCATCTGACCTTGGTATGTTAATTGGAATTCAACCAAAATTAGATGAATTAGAGTCAATCGTCGCAAGGGAATTGGGAGGAGTTGGGTTTATAGGAATATGGGGTACAAGAGGCATAGGCAAAACAACTCTTGCTAGAGCTTTTTATGAGCGAAAGCTCAAAAACTTTGAGATTCACTGGTTTCTTCATAATATTAGAGAGGCATATGAAAAAGAAGGTTTGATTTCATTGCAAAGAAGACTTCTTTTTTCTTCAGAGAAAAGAAGTATGGAAGTGTGTGATTGTTATGAAGGAATGAAGTTGATAAAAAACATGTTGCACAACAGAAAAGTTCTACTTGTCCTTGATGATGTGAGTGACATTAGCCAACTTGAAAATTTGGCTCCAAAGCAAGGATGGTTCAACAAAGGGAGTATAATAATAATAACAACTAGGGACAAGCATTTGCTATCCTCGCATGGTGTATCTATTAAGTATGATGTGAAATTCTTGAGTGATAATGAGTCCCTTCAACTTTTCCTTCAAAAAGCCTTTAAAGGAGATAAACCTAATCAAGATTATTTGAACCTTGCCAGAACCGTCATTGAATATGCTAGAGGCCTTCCTTTAGCGCTCAAAGTGTTAGGTCCATTTCTTTGCAAAAGAACTATTGTGCAATGGAAGCATGCACTAGCTAAGTTCAAGAAATTTCCTCCAAATGACATTTTAAAGATACTTCAAGGGACAGAAGCTATTCGGGGAATAATCCTCACATTAGAAAAGTCATGTGATGCATTTTGGGATCCTGAAGCCTTCTCAAAAATGAGTAATCTCAAGTTACTTATCATTTCAAATTGCTCACATGTTTTACGTTTTCAATTGAATCTTCCTTATGGACTCAAGTCCCTTTCCGAAGAGTTGAAAGTGATAATATGGGAGGGGTATCCATTATTTTACTTGCCAAGTCAACCTCAACTCCATCAACTTGTTGGACTAATAATGCGACATAGCAAGTTAAAAGAACTTTGGAGCGGAAGACCGTCTCTCCAAAGCCTCAAGTCCATTGATCTTTCTTATTCAGAGTACCTCAACAAAACCCCAAATTTTGATGGAATTCCTCATCTTGAAAAATTGATTCTTGAAGGGTGTTCTAACTTGATTGAAATTCACCGATCCCTTGGACAACACAAGAAACTCGTCATTGTTAACTTGAAAGATTGCAGAGAAGTTAAAAACCTTCCAAGGAAATTTGAGATGAATTGCTTAGAGACTTTTGTTCTATCTGGTTGTTCAAGAGTTATAAAACTTCCTGAGTTTGGAAAAGATATGGAACGTCTGTCTAAACTTGATTTAGAGGGGACTGCTATAACAAAACTGTCTCAATCACTGGGCAATTTGATTGGTCTTGAGGAGTTAAATTTGAAGAATTGTAAAAAGCTGGTTTGTCTTCCATGTGATGTTTGTAAATTGAAATCTCTGAAAATGATCAAAATTGCTGGCTGCTCAAAGTTTTCAAGCCTACCAGAGAATTTGAACGAAAAAGAGGCTGTGGAAGTGCTTGATTTGAGAAAAATTGCTATAAAAAGGCTTTCACTTTGTGAATACAATGGTGAAGCACAATCTTCCTCATCATGGAGTTGCTTCTCCCTTATTCAAAGGCCTTCGAGCTCAACAAATTTTATGTTATCGCCGTCTTTGTCATACATGAGCCAATTAGAATTAGGTTTTTGCAACCTCCACGATGGATCACTTCCTGATCACATCAATGGGTTATCATCGTTGGAATATTTAGATCTAAGTGGAAACAATTTCATTGACCTACCATCTTCCCTCATTTCCAATCTTTCCAAGCTTACTGTTCTTGGTCTCGGTTATTGCCCTAGGCTTCGGTCTTTGCCACAACTTCCGTCAAATCTATCAGCTATATTCGCAAACGAAATGTTGGAAGATGGCAAAAATCCAGAGATGAAGTTGATATTGATTCACGTGACTTCAGCAATCCTAATGAAGTTGAGAATAAAGAAGGCTGTAGCTGTTGGGAGTGGATGTCAAACTTTTGGCATTCCATTGAGCATGTTTTCCAAACTTGGTGTTAAGGTATATTTCAGACTTTCTAGTTCAACTATATCTACGCCAATCACAAAACCGGTCCAGAAAGCTTTGTTTTTGTCTCCCTTTACTAGCTAG 2775 0.3802 MVFVSVEFKMCVGKTGPSREPRRAVAATFVCGDYSKSLRWRVMLMELGVLQVLLPQLRDGRLRTFRDEEELERGEYINPGLVQAIDESRSAIVVLSPNYASSTWCLDELQKILQLREESSLRVFPIFYGVDPSNVRKQKGCFAEAFIKHEERFVQDKMKVRKWRDALEKVATISGWDSQNWHEMEFIESIAEEIMSKLLDDELPSDLGMLIGIQPKLDELESIVARELGGVGFIGIWGTRGIGKTTLARAFYERKLKNFEIHWFLHNIREAYEKEGLISLQRRLLFSSEKRSMEVCDCYEGMKLIKNMLHNRKVLLVLDDVSDISQLENLAPKQGWFNKGSIIIITTRDKHLLSSHGVSIKYDVKFLSDNESLQLFLQKAFKGDKPNQDYLNLARTVIEYARGLPLALKVLGPFLCKRTIVQWKHALAKFKKFPPNDILKILQGTEAIRGIILTLEKSCDAFWDPEAFSKMSNLKLLIISNCSHVLRFQLNLPYGLKSLSEELKVIIWEGYPLFYLPSQPQLHQLVGLIMRHSKLKELWSGRPSLQSLKSIDLSYSEYLNKTPNFDGIPHLEKLILEGCSNLIEIHRSLGQHKKLVIVNLKDCREVKNLPRKFEMNCLETFVLSGCSRVIKLPEFGKDMERLSKLDLEGTAITKLSQSLGNLIGLEELNLKNCKKLVCLPCDVCKLKSLKMIKIAGCSKFSSLPENLNEKEAVEVLDLRKIAIKRLSLCEYNGEAQSSSSWSCFSLIQRPSSSTNFMLSPSLSYMSQLELGFCNLHDGSLPDHINGLSSLEYLDLSGNNFIDLPSSLISNLSKLTVLGLGYCPRLRSLPQLPSNLSAIFANEMLEDGKNPEMKLILIHVTSAILMKLRIKKAVAVGSGCQTFGIPLSMFSKLGVKVYFRLSSSTISTPITKPVQKALFLSPFTS 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5216g00012 924 Pfam NB-ARC domain 230 434 IPR002182 GO:0043531
Pral5216g00012 924 Gene3D Ribonuclease Inhibitor 752 842 IPR032675 -
Pral5216g00012 924 ProSiteProfiles Leucine-rich repeat profile. 789 810 IPR001611 GO:0005515
Pral5216g00012 924 FunFam Disease resistance protein (TIR-NBS-LRR class) 44 200 - -
Pral5216g00012 924 Gene3D - 45 197 IPR035897 -
Pral5216g00012 924 Gene3D - 198 362 IPR027417 -
Pral5216g00012 924 Gene3D Ribonuclease Inhibitor 463 631 IPR032675 -
Pral5216g00012 924 SUPERFAMILY L domain-like 463 835 - -
Pral5216g00012 924 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 176 IPR035897 -
Pral5216g00012 924 PRINTS Disease resistance protein signature 543 559 - -
Pral5216g00012 924 PRINTS Disease resistance protein signature 233 248 - -
Pral5216g00012 924 PRINTS Disease resistance protein signature 308 322 - -
Pral5216g00012 924 PRINTS Disease resistance protein signature 401 415 - -
Pral5216g00012 924 Pfam TIR domain 49 205 IPR000157 GO:0007165
Pral5216g00012 924 Gene3D - 366 445 IPR042197 -
Pral5216g00012 924 SMART LRR_typ_2 639 662 IPR003591 -
Pral5216g00012 924 SMART LRR_typ_2 787 810 IPR003591 -
Pral5216g00012 924 Gene3D Ribonuclease Inhibitor 632 750 IPR032675 -
Pral5216g00012 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 443 IPR027417 -
Pral5216g00012 924 ProSiteProfiles TIR domain profile. 30 198 IPR000157 GO:0007165
Pral5216g00012 924 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 66 441 IPR044974 GO:0006952
Pral5216g00012 924 SMART till_3 39 173 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5216g00012 Pral-Chr5216 135812 145608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5216g00012 444 726 WRKY Transcription Factor Family AT4G12020 35.616 9.44e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5216g00012 - - pcin:129317488 586.645