Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5216g00011 ATGGCGCGTGATGCTGATGGAGTTGGGTGTTCTTCAAGCTCTTCTGGTTCAACTAAGAGAAGGAAGTATGATGTGTTTTTGAGCTTTCGAGGGGAAGATACTCGGAAAAATTTTACTGATCATTTGTATGCTGCTTTAAAACGTAAAGGATTAAAAACTTTCCGGGACGAAGAAGAACTTGAAAGGGGAGAATCTATTAATCCAAGTTTAGTACAAGCAATTGAAGAATCTCGTTCTACAATTATTGTGTTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGAATGAGCTTCAAAAGATCCTGCAATTAAAGGAAGAGACAAGTCTTCAAGTATTTCCGATATTTTACGGTGTAAATCCTTCTGATGTTAGGAAACAAAAGGGAAGTTTTGCAGATGCCTTCATAAGGCATGAAGAAAGATTTGCCGAAGACAAAATAAAGGTGCAAAAGTGGAGAGATGCTTTACAAAAAGTTGCTTCTTTATCTGGTTGGGACTCCAAAGATCAGTATGAAAGCGAATTCATTGAAAACATTGCTGAAAAAATGGAGTCAAAGTTACGTGATAAATCAGCATCTGGTCATGGCAAATTAATTGGAATTGAGCCAAAATTAGATGAATTGAAGTCAATGGTAGCAAGGGAATCAAAAGGAGTTGAGTTTATAGGAATATGGGGCACAGGCGGCGTGGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCAAGAGCGGCAGCGCAAAAACTTTGAGACTCACTGCTTCCTTGATAATATTAGAGAGGCATGGGAAAAAGAAGGTTTGATTTCATTGCTAAGAAAACTTCTTTCGTCTCTAGAAAAAAAGAGTATGGAAGTGGCTGATTCTTATGAAGGAATGGAGTTAATAAAGAGAAAGTTGACTGACAGAAAAATTCTACTTGTCCTTGATGATGTGAGTGATCCTAGCCAACTTGAAAATTTGGCTCCAAAGCAAGGATGGTTCAGCGAAGGGAGCATAATAATAATAACAACTAGGGATAAGCATTTGTTATCATCACACGGTGTATCTGCTGTGTATGAATTCAAATTATTGAGCGATAAAGAGTCTCTTGAACTTTTCCTTGAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGGTTATTTGAAACTTGCTAGAACCGTCATTGAGTATGCTAGAGGCCTTCCTTTAGTGCTCACAGTGTTAGGTTCATCTCTTTGCAAAAGACCTATAGAGGAATGGAAGGATGAACTAGCTAAGCTCAAGAAAATTCCTCCAAAGGACATTTTGAAGATACTTCGGGTGAGTTTTGATGGACTGGATGATCAGCAGAAAACCATATTCTTGGATGTTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGATAAGGGTATTCGCCCAGAAACTGAGATAAATGTTCTCATTAAGAAATCACTAATAATTAGTTATGAAGGGCATTTGTGGGTGCATGAAATTCTCCGAGATATGTGTAAATATATTATCTATCAAGAATCACCTTATGATGCCGGCAAGCGTTCCCGGATATTGTCTTTGGAGGATGCCAATCACGGGACAGAAGCAATTCGAGGAATAGCGCTAACATTGGAAAAGTCATGTGATGCATTCTGGGATCCTGAATCCTTCTCAAAGATGAGTAATCTTAGGTTACTTACGATTTCAAGTCCCTCACATGTTTCACATTGCCAATTAAATCTTCTGCATGGGCTCAAATCCCTTTCTAGTGACTTGAGAGTCATAGAATGGTCTCTCCCAAGCCTGAAGTCCCTCGATCTATCTCATTCAAAATGCCTCATCGAAGTCCCAAATTTTGATGGAATTCCTCATCTTGAAAAGTTGATTCTTGAAGGGTGTTCTAACTTGGTTGAAATTCACCCCTCTCTTGGGCAACACAAGAAACTTGTCACTGTTGACTTGAAAGATTGCAAAGAAGTTAAAACCCTTCCAGAAAAATTTGAGATGAATGGCTTGGAGACTTTTATTCTATCGGGTTGTTCAAAAGTTAGAAAACTTCCTGTGTTTGGAAAAGATATGACACGTCTATCTAAGCTTGATTTAGAGAAGACTGCTATAGCCAAACTACCTCAATCGTTGGGCAATTTGATTGGTCTTGTTAAATTAAATTTGACGAACTGCAAAAAGCTGGTCTGTCTTCCATGTAGTGTTAGTAAGTTGAAAGCTCTGAAAGTTATCAAAATGTCTCAATGCTCAAAGTTTTCAAGGCTGCCAGAGAACTTGAATGAAAATGAAGCTTTGGAAAAGCTGGATTTGAGTCTCATTGCTATACAAGGGTTATCATTTAGTGACTACAACGGTGAAGCACAATCTTCATCATCGTGGAGTTGCTTATCCCTTCTTCAAAGGCCTTCAAGCTCCAACAAGTTTTTGTTGCCGCCGTCTTTGTCATTCTTGAAAGAATTAGACTTAAGGTTTTGCGGTCTCCATGATGGATCACTTCCTGATGACATCAGCAGGTTATCATCATTGGAAATTTTAAATCTAAGTCAAAACAATTTCATTGACTTACCATCTGGCCTCATTTCCAATCTCTCGAAGCTTAAATGTATTGGTCTCTTTTATTGTCCAAGGCTTCGGTCTTTGCCGCAACTTCCGTCAAATCTATCACTTGTGTGGGCTGATTGTTCTTCATCAATGAAACATTACGGATGTGCACATCAATTATGGGATTTTATTGAATCATTTCAACCTCAGGTTCACAACCATTTAAATTTGGAGTCAGCATTTATAACAGGGTATTCAGAAACTTTTTATTACCTCAGGCATTGTACTCGCCTATTAACAATTCTAGGTAGCGAAGTTCCATCATGGTTTTATAATCAAAACTACTTTTGTGAGAAAGAATTCCGGTGGTGTCCAAATGTGTCGTTCATGATAAATATATCCCCTGATTATTGTGGTTCACGTGAATGGTGGGGCATAGCCATATGCTTAGTCATAGAACACGATCTCACATTTGGAGAGGGGTGGGATGAAATTTGGTGGAGCTGCAGATTTCGTAATGATGAATCTCCAAACTGGTATTACGCACATGATTCTTCTTTCCATACGGTCTGGACTCCTAGGCTTTTTGTGAGATATATTCCTTGTTCCTCTTTGGTTGTCAACGGACTTCAAATGGTATTTTTCTCTAAGAATGCAACGGAAAATAAGTCACCAAGGATGAAAATAAGCAAGTGTGGGTGGCGATTGGTGTGTAAAGAAGATGTTGAAGCTTGGCGAAGAACAAGGGACGAAGGCTGTAGTATCATCAATAACTACATGAAGATTGATCCAGACATCAACAATGGAGGTTATAGTCCCTCGCCGAGACGTGATGATATTATTGTAGAAGCAGATGGCGCCTATTCTCAGTTAGATGACAAAGCAGCTTGTGGAGGCATTCTTAAAGATGGCCACAATTGTATGAAGGAGGCGTTTCTTCTGAAATTAAGTGGTGGAGATACCCTCACAGCCAAACTATGGGGTTGCTTGATGGGTCTCAAAAGAGCTTGGGACGCTGGTATTGGAGATGTTATCTTGAGAAGCGACTCCGCTGAGGCTGTTCGATTGATCAAATTTGAAGTCCCTGAGACGCACAAGGATATTGCTCTCATCATGGAAATCAAAGGGATGCTAGAGTGGGATTGGTTTGTGGATATCCAGGTCTTTCACAGGGACGGCAATGGCATTGCTTATTTACTTGCTAAAAGAGCACTTAATGGAGCAATGGGTCTGCAAATACTGGGCCCCAGGACAATGATGAAAATATTACAGGCCACTGATGTTATACAACCTGAAGTTGAGAAAGATGGAGGTTATACTCAATGCTCCAGACATCATGGTCAGTTCGTTGTTGAAGAAGATGAGTCTATACTTCCAAGGTACGTAGATCAACCCTTCTGGTTTTAG 3951 0.3941 MARDADGVGCSSSSSGSTKRRKYDVFLSFRGEDTRKNFTDHLYAALKRKGLKTFRDEEELERGESINPSLVQAIEESRSTIIVFSPNYASSTWCLNELQKILQLKEETSLQVFPIFYGVNPSDVRKQKGSFADAFIRHEERFAEDKIKVQKWRDALQKVASLSGWDSKDQYESEFIENIAEKMESKLRDKSASGHGKLIGIEPKLDELKSMVARESKGVEFIGIWGTGGVGKTTLARAFYEQERQRKNFETHCFLDNIREAWEKEGLISLLRKLLSSLEKKSMEVADSYEGMELIKRKLTDRKILLVLDDVSDPSQLENLAPKQGWFSEGSIIIITTRDKHLLSSHGVSAVYEFKLLSDKESLELFLEKAFKEEHPNEGYLKLARTVIEYARGLPLVLTVLGSSLCKRPIEEWKDELAKLKKIPPKDILKILRVSFDGLDDQQKTIFLDVACFFNGMDKDHVIQILETLDKGIRPETEINVLIKKSLIISYEGHLWVHEILRDMCKYIIYQESPYDAGKRSRILSLEDANHGTEAIRGIALTLEKSCDAFWDPESFSKMSNLRLLTISSPSHVSHCQLNLLHGLKSLSSDLRVIEWSLPSLKSLDLSHSKCLIEVPNFDGIPHLEKLILEGCSNLVEIHPSLGQHKKLVTVDLKDCKEVKTLPEKFEMNGLETFILSGCSKVRKLPVFGKDMTRLSKLDLEKTAIAKLPQSLGNLIGLVKLNLTNCKKLVCLPCSVSKLKALKVIKMSQCSKFSRLPENLNENEALEKLDLSLIAIQGLSFSDYNGEAQSSSSWSCLSLLQRPSSSNKFLLPPSLSFLKELDLRFCGLHDGSLPDDISRLSSLEILNLSQNNFIDLPSGLISNLSKLKCIGLFYCPRLRSLPQLPSNLSLVWADCSSSMKHYGCAHQLWDFIESFQPQVHNHLNLESAFITGYSETFYYLRHCTRLLTILGSEVPSWFYNQNYFCEKEFRWCPNVSFMINISPDYCGSREWWGIAICLVIEHDLTFGEGWDEIWWSCRFRNDESPNWYYAHDSSFHTVWTPRLFVRYIPCSSLVVNGLQMVFFSKNATENKSPRMKISKCGWRLVCKEDVEAWRRTRDEGCSIINNYMKIDPDINNGGYSPSPRRDDIIVEADGAYSQLDDKAACGGILKDGHNCMKEAFLLKLSGGDTLTAKLWGCLMGLKRAWDAGIGDVILRSDSAEAVRLIKFEVPETHKDIALIMEIKGMLEWDWFVDIQVFHRDGNGIAYLLAKRALNGAMGLQILGPRTMMKILQATDVIQPEVEKDGGYTQCSRHHGQFVVEEDESILPRYVDQPFWF 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5216g00011 1316 Gene3D - 1126 1255 IPR036397 GO:0003676
Pral5216g00011 1316 Gene3D - 186 351 IPR027417 -
Pral5216g00011 1316 CDD RNase_H_like 1133 1250 IPR044730 -
Pral5216g00011 1316 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral5216g00011 1316 SMART LRR_typ_2 840 863 IPR003591 -
Pral5216g00011 1316 SMART LRR_typ_2 692 715 IPR003591 -
Pral5216g00011 1316 Gene3D - 21 185 IPR035897 -
Pral5216g00011 1316 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Pral5216g00011 1316 SMART till_3 22 162 IPR000157 GO:0007165
Pral5216g00011 1316 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral5216g00011 1316 SUPERFAMILY Ribonuclease H-like 1127 1255 IPR012337 -
Pral5216g00011 1316 Pfam Reverse transcriptase-like 1132 1252 IPR002156 GO:0003676|GO:0004523
Pral5216g00011 1316 SUPERFAMILY L domain-like 498 914 - -
Pral5216g00011 1316 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 755 IPR044974 GO:0006952
Pral5216g00011 1316 Gene3D Ribonuclease Inhibitor 689 976 IPR032675 -
Pral5216g00011 1316 Gene3D Ribonuclease Inhibitor 546 688 IPR032675 -
Pral5216g00011 1316 Pfam TIR domain 22 193 IPR000157 GO:0007165
Pral5216g00011 1316 Pfam NB-ARC domain 205 422 IPR002182 GO:0043531
Pral5216g00011 1316 PRINTS Disease resistance protein signature 596 612 - -
Pral5216g00011 1316 PRINTS Disease resistance protein signature 298 312 - -
Pral5216g00011 1316 PRINTS Disease resistance protein signature 391 405 - -
Pral5216g00011 1316 PRINTS Disease resistance protein signature 221 236 - -
Pral5216g00011 1316 Gene3D - 356 440 IPR042197 -
Pral5216g00011 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5216g00011 Pral-Chr5216 124110 132034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5216g00011 21 782 WRKY Transcription Factor Family AT4G12020 29.448 9.97e-79 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5216g00011 - - pcin:129318967 1271.14