Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5216g00009 ATGGATTGGAGGGGCAATTGTGATGAAGTGTTCAGATTCCAAATCCTTGCAAGGGCGCATGATGCTGATGGAGATGGGGGCTCTTCAAGTTCTTCTGCTTCAACTAAGAGATGGAAATATCATGTGTTCTTGAGTTTTCGAGGGGAAGATACTCGAACAAGTTTTACTGATCATTTGTATAGTGCTTTAAAACGTAAAGGATTAAAAACTTTCAGGGATGAAGAAGAACTTGAAAGGGGAGAATCTATCACACCAAGTTCGATACAAGCAATTGAAGAATCTCTTTCTGCAATTGTGGTGCTCTCCCCAAGTTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAATGATTCTTCATTTAAAGGAAGAGTCGAGTCTTCAGGTATTTCCAATATTTTACGGAGTAGATCCATCTGATGTTGGAAAACAAAAGGGAAGTTTTGCAAAAGCATTCATGAAGCATGAAGAAAGATTTGCTCAAGACATAATAAAAGTGCAAAGATGGAGGGATGCTTTAGGAAAAGTTGCCACTACATCTGGTTGGGACTCAAAAAATTATTTACATCAATTACATAGACCCCCCACTATTTTAAAAACATACATTTTAGGGAAAAAGACAGAAAGATGCTACTTAAACTTCATAATCCCTAAATGGTATGAAACAGAATTCATTGAAAGCATTGCTAAAGAAATGATGACAAATTTACTTGATGAATCACTATCTGACCTTGGTATGTTAATTGGGATTGAATCAAAATTAGGTGAATTGGAGTCATTTGTAGCAAGGAAATCACAAGGAGATGGGTTTATAGGAATATGGGGCACAGGAGGTTTAGGCAAAACAACTCTTGCTAGAGCTTTTTATGAGCGAAAGCTTAAAGACTTCGAGATTCACTGCTTTCTCCATAATATTAGAGAGGCATATGAAAAAGATGGTTTGATGTCATTGCAAAGAAGACTTCTTTTTTCTATAGATAAAAGAAGTATGGAAGTGGATAATTTTTATGAAGGAATGAAGCTAATAAAAAGCATGTTGGGCAACAAAAAATTTCTACTTGTCCTTGATGATGTGAGTGACGTTAGCCAACTTGAAAATTTGGCTCCAAAGCAAGGATGGTTCAGCAAGGGAAGCATAATATTAATAACAACTAGGGATAAGCATTTGCTATCATCACATGGTGTATCTTCTGTATATGACATCAAATTCTTGAATGATAATGAATCACTTGAACTTTTCCTTCAAAAAGCTTTTAAAGGAGAGCAACCTAATGAAGATTATTTGGACCTTCCTAGAACCATCATTAAATATGCTGGAGGCCTTCCTTTAACACTCAAAGTGTTAGGTTCATTTCTTTGCAAAAGAACTATAATGGAATGGAAGGATGCACTGGCTAAGTTCAAGAAGGCTCCTCCAAAGGACATTTTGAAGATACTTCAAGTGAGTTTTGATGGATTGGACATTAAGGAGAAGACTATATTCTTAGATATCACTTGTTTTTTCAATGGGATGGCCCAAGATCATCTCATACAAATTTTAGAAACTTTGGATGAGGATCTTCATCCAAGAATTGGAATAACTGTTCTTATTGAGAAATCATTGGTAATTGATTATGAAGGGTATCTGTGGGTGCATGAAATTCTACAAGACATGGGGAAATTTATTGTCTATCAACAATCACCTGATGATGCTGGGAAGCGTTCTAGGATATTATCTTTAGAGGATGCTAATCATGTACTAGAAAGAAATAAGGGGACAGAAGCAATTCGAGGAATATTGTTAAGATTAGAAAAGTCATGTGATGTATTTTGGGATCCTGAAGCCTTCTTAAAGATGCGTAATCTCAAGATACTTATTATTTCAATTTCAAGTTGCTCAGATGTTTCACATTGCCAGTTGAATCTTCCTTATGGACTCAAGACACTTTCCAGTGAGTTGAAAATCATAGAATGGGAGAGGTATCCATTACTTTATTTGCCAAGTCAACCTCAATTGCATAAACTTGTTGAACTAAAAATGCAGCATAGCAAATTAAAAGAACTTTGGAGAGGAATACAGTCTCTTCAAAGCCTGAAGTCCATTGATCTATCCCATTCAGAATGCCTCATCAAAGCACCAAATTTTGATGGAATTCCTCATCTTGAAAAATTGATTCTTGAAGGGTGTTTTAATTTGGTTGAAATTCACCGGTCTCTTGGCCAACACAAGAAACTTGTCATTGTTAACTTGAAAGGTTGCAGAAAAGCTAAAATCCTTCCAAGAAAATTTGAGATGAATAAATTAGAAGCTTTTGTTCTATCTGGTTGTACAAGAATTAGAAAGCTTCCTCAGTTTGGAAAAGATATGAAATGTTTATCTAAGCTTGATTTACAGGAGACTGCTATAACCAAACTACCTCAATCATTGGGCAATTTGATTGGTCTCACTGAATTAAGTTTGAAAAATTGCAAAAAGCTAGTTTGTCTTCCATATAACATTTGTAAATTGAAAGCTTTGAAAATTATCAGAATTCCAGGCTGCTCACAGCTTTCAAAGTTGCCCGAGAATTTGAATGACAATGAGGCTTTGGAAGAGCTTGATTTGAGTAAAATTGCTGTGAAAGGGTTATCACTTTAA 2616 0.3555 MDWRGNCDEVFRFQILARAHDADGDGGSSSSSASTKRWKYHVFLSFRGEDTRTSFTDHLYSALKRKGLKTFRDEEELERGESITPSSIQAIEESLSAIVVLSPSYASSTWCLDELQMILHLKEESSLQVFPIFYGVDPSDVGKQKGSFAKAFMKHEERFAQDIIKVQRWRDALGKVATTSGWDSKNYLHQLHRPPTILKTYILGKKTERCYLNFIIPKWYETEFIESIAKEMMTNLLDESLSDLGMLIGIESKLGELESFVARKSQGDGFIGIWGTGGLGKTTLARAFYERKLKDFEIHCFLHNIREAYEKDGLMSLQRRLLFSIDKRSMEVDNFYEGMKLIKSMLGNKKFLLVLDDVSDVSQLENLAPKQGWFSKGSIILITTRDKHLLSSHGVSSVYDIKFLNDNESLELFLQKAFKGEQPNEDYLDLPRTIIKYAGGLPLTLKVLGSFLCKRTIMEWKDALAKFKKAPPKDILKILQVSFDGLDIKEKTIFLDITCFFNGMAQDHLIQILETLDEDLHPRIGITVLIEKSLVIDYEGYLWVHEILQDMGKFIVYQQSPDDAGKRSRILSLEDANHVLERNKGTEAIRGILLRLEKSCDVFWDPEAFLKMRNLKILIISISSCSDVSHCQLNLPYGLKTLSSELKIIEWERYPLLYLPSQPQLHKLVELKMQHSKLKELWRGIQSLQSLKSIDLSHSECLIKAPNFDGIPHLEKLILEGCFNLVEIHRSLGQHKKLVIVNLKGCRKAKILPRKFEMNKLEAFVLSGCTRIRKLPQFGKDMKCLSKLDLQETAITKLPQSLGNLIGLTELSLKNCKKLVCLPYNICKLKALKIIRIPGCSQLSKLPENLNDNEALEELDLSKIAVKGLSL 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5216g00009 871 Gene3D - 33 242 IPR035897 -
Pral5216g00009 871 PRINTS Disease resistance protein signature 270 285 - -
Pral5216g00009 871 PRINTS Disease resistance protein signature 345 359 - -
Pral5216g00009 871 PRINTS Disease resistance protein signature 686 702 - -
Pral5216g00009 871 PRINTS Disease resistance protein signature 438 452 - -
Pral5216g00009 871 Gene3D - 403 487 IPR042197 -
Pral5216g00009 871 Gene3D - 243 398 IPR027417 -
Pral5216g00009 871 SMART till_3 39 179 IPR000157 GO:0007165
Pral5216g00009 871 SUPERFAMILY "Winged helix" DNA-binding domain 474 580 IPR036390 -
Pral5216g00009 871 SUPERFAMILY L domain-like 603 869 - -
Pral5216g00009 871 ProSiteProfiles TIR domain profile. 38 232 IPR000157 GO:0007165
Pral5216g00009 871 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 776 IPR044974 GO:0006952
Pral5216g00009 871 Pfam NB-ARC domain 265 473 IPR002182 GO:0043531
Pral5216g00009 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 497 IPR027417 -
Pral5216g00009 871 Pfam TIR domain 39 239 IPR000157 GO:0007165
Pral5216g00009 871 Pfam Leucine Rich Repeat 667 686 IPR011713 -
Pral5216g00009 871 Gene3D Ribonuclease Inhibitor 757 866 IPR032675 -
Pral5216g00009 871 Gene3D Ribonuclease Inhibitor 599 756 IPR032675 -
Pral5216g00009 871 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 182 IPR035897 -
Pral5216g00009 871 FunFam Disease resistance protein (TIR-NBS-LRR class) 36 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5216g00009 Pral-Chr5216 107200 115763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5216g00009 40 869 WRKY Transcription Factor Family AT4G12020 28.537 1.03e-86 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5216g00009 - - pcin:129318967 1035.4