Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5216g00008 ATGGCGCGTGATGCTGATGGAGTTGGGTGTTCTTCAAGCTCTTCTGGTTCAACTAAGAGAAGGAAGTATGATGTGTTTTTGAGCTTTCGAGGGGAAGATACTCGGAAAAATTTTACTGATCATTTGTATGCTGCTTTAAAACGCAAAGGATTAAGAACTTTCCGGGATGAGGAAGAACTTGAAAGGGGAGAATCTATTAATCCAAGTTTATTACAAGGAATTGAAGAATCTCGTTCTGCAATTATTGTGTTCTCTCTAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATCCTGCAGTTGAAGGAAGAGACAAGTCTTGAAGTATTTCCGATATTTTACGGTGTAGATCCATCTGATGTTAGGAAACAAAAGGGAAGTTTTGCAGAGGCATTCAGAAAGCATGAAGAAAGATTTGCACATGACAAAATGAAGGTGGAAAAATGGAGGGATGATTTAGAAAAAGTTGCTGCTATATGTGGTTGGGAGTTAAACGACGGGTATGAAGCAGAATTCATTGAAAGCTTTGTTGGAGAAATGGAGTCAAAGTTGCTTGATAAATCAGCATCTAGTCTTGGCAGGTTAATTGGAATTGAACCAAAATTAGATAAATTGGAGTCAATCGTGGAAAGTGAATCAAAAGGAGATGGGTTTATAGGAATATGGGGCACAGGAGGTGCAGGGAAAACAACTCTTGCTAGAGCCTTTTATGAGCGAAAGCGCAGAAACTTTAAGAATCATTGTTTTCTTCCTAATATTAGAGAGGCATGTGAAAAAGATCGTTTGATTTCATTGCAAAGAAAACTTCTTTTTTCTTTAGATAAAAGGAGTATGGAAGTGACTGATTCTTATGAAGGAATGGAGTTAATAAAAAGCAAGTTGACCAACAGAAAAATTCTACTTGTCCTTGATGATGTGAATCATATTGAGCAACTTGAAAATTTCACTCCAAGGCAAGGATGGTTCAGCAAAGGGAGCATAATAGTGATAACAACAAGGGATAAGCATTTGCTATCATCATATGGTGTATCTGATAGTGCTATATATGACATTGAATTCTTGACTGATAGTGAGTCCCGTGAACTTCTCATTCAAAATGCCTTTAAAGAAGGGCAACCTGATGAAATTTTTTTGAAACTTGCTACAAACGTCATTGAATATGCTGGAGGCCTTCCTTTAGCAATCAAAGTGTTAGGTTCATTTCTTTGCAAAAGGAAGATAGAGGAATGGGAATATGCACTGGCTAAGTTCAAGAACTATCCTCCAGAGGACATTTCGAAGATACTTGAAGTGAGTCTTCACGGATTAGATAACCAGGAGAAAACCATATTCTTGGATATTGCTTGCTTTTTCAATGGGATGGATGAAGATCATATCATACACATTTTAGAAACGTTCGATAAGGATCTTCACACAAAAATTGGAATAAGGGTTCTTATTGAGAAATCACTAGTAATTAATTATGAAGGGCGTTTGTGGGTGCATGAAATTTTGCAAAATGTGGCTAAGCGTGTTGTCTATCAAGAATCACTTGGTGATGCCAGCAAGCGTTCTAGGATATTGTCCTTGGATGATGCCAATCATGTATTAGGAGGAAATAAGGTGACATTCCAAAGTTCTTGTGTTTGTGCACTCTTATAA 1650 0.3727 MARDADGVGCSSSSSGSTKRRKYDVFLSFRGEDTRKNFTDHLYAALKRKGLRTFRDEEELERGESINPSLLQGIEESRSAIIVFSLNYASSTWCLDELQKILQLKEETSLEVFPIFYGVDPSDVRKQKGSFAEAFRKHEERFAHDKMKVEKWRDDLEKVAAICGWELNDGYEAEFIESFVGEMESKLLDKSASSLGRLIGIEPKLDKLESIVESESKGDGFIGIWGTGGAGKTTLARAFYERKRRNFKNHCFLPNIREACEKDRLISLQRKLLFSLDKRSMEVTDSYEGMELIKSKLTNRKILLVLDDVNHIEQLENFTPRQGWFSKGSIIVITTRDKHLLSSYGVSDSAIYDIEFLTDSESRELLIQNAFKEGQPDEIFLKLATNVIEYAGGLPLAIKVLGSFLCKRKIEEWEYALAKFKNYPPEDISKILEVSLHGLDNQEKTIFLDIACFFNGMDEDHIIHILETFDKDLHTKIGIRVLIEKSLVINYEGRLWVHEILQNVAKRVVYQESLGDASKRSRILSLDDANHVLGGNKVTFQSSCVCALL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5216g00008 549 PRINTS Disease resistance protein signature 391 405 - -
Pral5216g00008 549 PRINTS Disease resistance protein signature 296 310 - -
Pral5216g00008 549 PRINTS Disease resistance protein signature 221 236 - -
Pral5216g00008 549 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral5216g00008 549 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 533 IPR044974 GO:0006952
Pral5216g00008 549 Gene3D - 15 188 IPR035897 -
Pral5216g00008 549 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Pral5216g00008 549 Pfam NB-ARC domain 210 433 IPR002182 GO:0043531
Pral5216g00008 549 Gene3D - 357 445 IPR042197 -
Pral5216g00008 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 450 IPR027417 -
Pral5216g00008 549 Gene3D - 189 351 IPR027417 -
Pral5216g00008 549 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral5216g00008 549 Pfam TIR domain 22 213 IPR000157 GO:0007165
Pral5216g00008 549 SUPERFAMILY "Winged helix" DNA-binding domain 427 532 IPR036390 -
Pral5216g00008 549 SMART till_3 22 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5216g00008 Pral-Chr5216 68082 72512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5216g00008 21 533 WRKY Transcription Factor Family AT4G12020 26.448 1.58e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5216g00008 - - pcin:129318967 663.685