LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5208g00004	ATGTCTTTACGGCATCATAATAATGTTGAGCTCAATGGTGTCTCAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGCGCTGAAACTCCAAATTTGCAATCCCAAAAGAATCAGCGGCCACCTTCTTCTGGTCCTCTAGAAAGGTTGGAGAAGTTGATGCATGAAGCAGGGAACAAGTATTGTGCTGATTGTGGATCTCCTGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATAAAATGTTCTGGCATACATAGAAGCCTAGGAGTTCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTTCTGAACTGGCAAAGTTAGGAGGAAATGCATCAGTAAATGAAAAGTACGAAGCTTGCATCCCTAGTTATATGAAAAAGCCAAAGCCAAGTTCCTCCATTGAGGAGCGTACTGACTTTATCAGGAGGAAATACGAGTTGCTACAATTTATGGGGTGTGAAGAACAGTTGTCCTGCCCCTTTATACCACAACAGAGCACTTCCTCATGCATAGACAAGAAAAATTATAATAAACAAGGAAACAAAAATCGTATTGGGAGTGCATTTCGTAACAGCTGGGGAAGAAAAGAACCTGATAATATTAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAACGTGGTCAAAGGCACTAACCTGGCTGTCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTGAATCCTGTCTGGAATGAGAGCCTAATGTTATCAATTCCGCACAACATTCCTCCACTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCCTACTTGCAGCTGCAAAAGCCTATGAGAAATCTGCAGTCAACGAGTCCATGGAGTTTGAAAAATGGGTGGCAAGTTCAGATGGCGCTCTCGTTAAAGATGGTGCCATCTCCCTCGAAGATGGGAAGATCAGACAGGAAATATCTGTAAAGCTGATGAATGTGGAGAGAGGGGAGCTGGAAGTTGAGCTTGAATGTCTTCCTCTCACTCAATAG	1155	0.4147	MSLRHHNNVELNGVSGSGCCLYDLLCAETPNLQSQKNQRPPSSGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVSELAKLGGNASVNEKYEACIPSYMKKPKPSSSIEERTDFIRRKYELLQFMGCEEQLSCPFIPQQSTSSCIDKKNYNKQGNKNRIGSAFRNSWGRKEPDNIKASKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYEKSAVNESMEFEKWVASSDGALVKDGAISLEDGKIRQEISVKLMNVERGELEVELECLPLTQ	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5208g00004	384	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	43	168	IPR001164	GO:0005096
	Pral5208g00004	384	FunFam	stromal membrane-associated protein 1 isoform X1	31	166	-	-
	Pral5208g00004	384	PRINTS	HIV Rev interacting protein signature	98	119	IPR001164	GO:0005096
	Pral5208g00004	384	PRINTS	HIV Rev interacting protein signature	77	94	IPR001164	GO:0005096
	Pral5208g00004	384	PRINTS	HIV Rev interacting protein signature	58	77	IPR001164	GO:0005096
	Pral5208g00004	384	Gene3D	C2 domain	227	384	IPR035892	-
	Pral5208g00004	384	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	40	384	IPR044518	GO:0005096\|GO:0005543
	Pral5208g00004	384	SUPERFAMILY	ArfGap/RecO-like zinc finger	48	161	IPR037278	-
	Pral5208g00004	384	CDD	ArfGap	49	155	-	-
	Pral5208g00004	384	Gene3D	Arf GTPase activating protein	28	168	IPR038508	-
	Pral5208g00004	384	SMART	C2_3c	229	324	IPR000008	-
	Pral5208g00004	384	Pfam	C2 domain	229	317	IPR000008	-
	Pral5208g00004	384	CDD	C2_ArfGAP	227	371	-	-
	Pral5208g00004	384	ProSiteProfiles	C2 domain profile.	207	326	IPR000008	-
	Pral5208g00004	384	SMART	arf_gap_3	47	168	IPR001164	GO:0005096
	Pral5208g00004	384	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	226	384	-	-
	Pral5208g00004	384	Pfam	Putative GTPase activating protein for Arf	48	160	IPR001164	GO:0005096
	Pral5208g00004	384	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	225	319	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5208g00004	Pral-Chr5208	5094	11341	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5208g00004	41	384	C2H2 Transcription Factor Family	AT4G21160	48.555	4.21e-119	347

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5208g00004	K12486		-	gmx:100799376	574.704