Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5208g00004 | ATGTCTTTACGGCATCATAATAATGTTGAGCTCAATGGTGTCTCAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGCGCTGAAACTCCAAATTTGCAATCCCAAAAGAATCAGCGGCCACCTTCTTCTGGTCCTCTAGAAAGGTTGGAGAAGTTGATGCATGAAGCAGGGAACAAGTATTGTGCTGATTGTGGATCTCCTGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATAAAATGTTCTGGCATACATAGAAGCCTAGGAGTTCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTTCTGAACTGGCAAAGTTAGGAGGAAATGCATCAGTAAATGAAAAGTACGAAGCTTGCATCCCTAGTTATATGAAAAAGCCAAAGCCAAGTTCCTCCATTGAGGAGCGTACTGACTTTATCAGGAGGAAATACGAGTTGCTACAATTTATGGGGTGTGAAGAACAGTTGTCCTGCCCCTTTATACCACAACAGAGCACTTCCTCATGCATAGACAAGAAAAATTATAATAAACAAGGAAACAAAAATCGTATTGGGAGTGCATTTCGTAACAGCTGGGGAAGAAAAGAACCTGATAATATTAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAACGTGGTCAAAGGCACTAACCTGGCTGTCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTGAATCCTGTCTGGAATGAGAGCCTAATGTTATCAATTCCGCACAACATTCCTCCACTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCCTACTTGCAGCTGCAAAAGCCTATGAGAAATCTGCAGTCAACGAGTCCATGGAGTTTGAAAAATGGGTGGCAAGTTCAGATGGCGCTCTCGTTAAAGATGGTGCCATCTCCCTCGAAGATGGGAAGATCAGACAGGAAATATCTGTAAAGCTGATGAATGTGGAGAGAGGGGAGCTGGAAGTTGAGCTTGAATGTCTTCCTCTCACTCAATAG | 1155 | 0.4147 | MSLRHHNNVELNGVSGSGCCLYDLLCAETPNLQSQKNQRPPSSGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVSELAKLGGNASVNEKYEACIPSYMKKPKPSSSIEERTDFIRRKYELLQFMGCEEQLSCPFIPQQSTSSCIDKKNYNKQGNKNRIGSAFRNSWGRKEPDNIKASKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYEKSAVNESMEFEKWVASSDGALVKDGAISLEDGKIRQEISVKLMNVERGELEVELECLPLTQ | 384 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5208g00004 | 384 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 43 | 168 | IPR001164 | GO:0005096 | |
Pral5208g00004 | 384 | FunFam | stromal membrane-associated protein 1 isoform X1 | 31 | 166 | - | - | |
Pral5208g00004 | 384 | PRINTS | HIV Rev interacting protein signature | 98 | 119 | IPR001164 | GO:0005096 | |
Pral5208g00004 | 384 | PRINTS | HIV Rev interacting protein signature | 77 | 94 | IPR001164 | GO:0005096 | |
Pral5208g00004 | 384 | PRINTS | HIV Rev interacting protein signature | 58 | 77 | IPR001164 | GO:0005096 | |
Pral5208g00004 | 384 | Gene3D | C2 domain | 227 | 384 | IPR035892 | - | |
Pral5208g00004 | 384 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 40 | 384 | IPR044518 | GO:0005096|GO:0005543 | |
Pral5208g00004 | 384 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 48 | 161 | IPR037278 | - | |
Pral5208g00004 | 384 | CDD | ArfGap | 49 | 155 | - | - | |
Pral5208g00004 | 384 | Gene3D | Arf GTPase activating protein | 28 | 168 | IPR038508 | - | |
Pral5208g00004 | 384 | SMART | C2_3c | 229 | 324 | IPR000008 | - | |
Pral5208g00004 | 384 | Pfam | C2 domain | 229 | 317 | IPR000008 | - | |
Pral5208g00004 | 384 | CDD | C2_ArfGAP | 227 | 371 | - | - | |
Pral5208g00004 | 384 | ProSiteProfiles | C2 domain profile. | 207 | 326 | IPR000008 | - | |
Pral5208g00004 | 384 | SMART | arf_gap_3 | 47 | 168 | IPR001164 | GO:0005096 | |
Pral5208g00004 | 384 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 226 | 384 | - | - | |
Pral5208g00004 | 384 | Pfam | Putative GTPase activating protein for Arf | 48 | 160 | IPR001164 | GO:0005096 | |
Pral5208g00004 | 384 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 225 | 319 | IPR035892 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5208g00004 | Pral-Chr5208 | 5094 | 11341 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5208g00004 | 41 | 384 | C2H2 Transcription Factor Family | AT4G21160 | 48.555 | 4.21e-119 | 347 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5208g00004 | K12486 | - | gmx:100799376 | 574.704 |