Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5208g00004 ATGTCTTTACGGCATCATAATAATGTTGAGCTCAATGGTGTCTCAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGCGCTGAAACTCCAAATTTGCAATCCCAAAAGAATCAGCGGCCACCTTCTTCTGGTCCTCTAGAAAGGTTGGAGAAGTTGATGCATGAAGCAGGGAACAAGTATTGTGCTGATTGTGGATCTCCTGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATAAAATGTTCTGGCATACATAGAAGCCTAGGAGTTCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTTCTGAACTGGCAAAGTTAGGAGGAAATGCATCAGTAAATGAAAAGTACGAAGCTTGCATCCCTAGTTATATGAAAAAGCCAAAGCCAAGTTCCTCCATTGAGGAGCGTACTGACTTTATCAGGAGGAAATACGAGTTGCTACAATTTATGGGGTGTGAAGAACAGTTGTCCTGCCCCTTTATACCACAACAGAGCACTTCCTCATGCATAGACAAGAAAAATTATAATAAACAAGGAAACAAAAATCGTATTGGGAGTGCATTTCGTAACAGCTGGGGAAGAAAAGAACCTGATAATATTAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAACGTGGTCAAAGGCACTAACCTGGCTGTCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTGAATCCTGTCTGGAATGAGAGCCTAATGTTATCAATTCCGCACAACATTCCTCCACTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCCTACTTGCAGCTGCAAAAGCCTATGAGAAATCTGCAGTCAACGAGTCCATGGAGTTTGAAAAATGGGTGGCAAGTTCAGATGGCGCTCTCGTTAAAGATGGTGCCATCTCCCTCGAAGATGGGAAGATCAGACAGGAAATATCTGTAAAGCTGATGAATGTGGAGAGAGGGGAGCTGGAAGTTGAGCTTGAATGTCTTCCTCTCACTCAATAG 1155 0.4147 MSLRHHNNVELNGVSGSGCCLYDLLCAETPNLQSQKNQRPPSSGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVSELAKLGGNASVNEKYEACIPSYMKKPKPSSSIEERTDFIRRKYELLQFMGCEEQLSCPFIPQQSTSSCIDKKNYNKQGNKNRIGSAFRNSWGRKEPDNIKASKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYEKSAVNESMEFEKWVASSDGALVKDGAISLEDGKIRQEISVKLMNVERGELEVELECLPLTQ 384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral5208g00004 384 ProSiteProfiles ARF GTPase-activating proteins domain profile. 43 168 IPR001164 GO:0005096
Pral5208g00004 384 FunFam stromal membrane-associated protein 1 isoform X1 31 166 - -
Pral5208g00004 384 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
Pral5208g00004 384 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Pral5208g00004 384 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Pral5208g00004 384 Gene3D C2 domain 227 384 IPR035892 -
Pral5208g00004 384 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 40 384 IPR044518 GO:0005096|GO:0005543
Pral5208g00004 384 SUPERFAMILY ArfGap/RecO-like zinc finger 48 161 IPR037278 -
Pral5208g00004 384 CDD ArfGap 49 155 - -
Pral5208g00004 384 Gene3D Arf GTPase activating protein 28 168 IPR038508 -
Pral5208g00004 384 SMART C2_3c 229 324 IPR000008 -
Pral5208g00004 384 Pfam C2 domain 229 317 IPR000008 -
Pral5208g00004 384 CDD C2_ArfGAP 227 371 - -
Pral5208g00004 384 ProSiteProfiles C2 domain profile. 207 326 IPR000008 -
Pral5208g00004 384 SMART arf_gap_3 47 168 IPR001164 GO:0005096
Pral5208g00004 384 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 226 384 - -
Pral5208g00004 384 Pfam Putative GTPase activating protein for Arf 48 160 IPR001164 GO:0005096
Pral5208g00004 384 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 225 319 IPR035892 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral5208g00004 Pral-Chr5208 5094 11341 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5208g00004 41 384 C2H2 Transcription Factor Family AT4G21160 48.555 4.21e-119 347
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5208g00004 K12486 - gmx:100799376 574.704