Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5205g00010 ATGATCTCAATCACTTCTGCTGAGCTTAACTACCTCATCTTCCGCTATCTTCACGAATCAGGTTTTACCCATTCAGCATTTGCTCTTGGCTATGAGGCAGGGATTGATAAAAGCAGAATTGATGGTAATTTAGTCCCACCAGGTGCTCTTGTAACATTCATACAGAAAGGAATTCAATATATTGAGCTGGAGGCGAACTTGAGTGGTAGTGATGCAGACACAGATGACGATTTCTCATTTCTACAACCTCTTGACCTTATTACAAAGGATCCAAAAGAACTACACAATATGGTCAAAGCCAAAAGGGAAAATCTACGTCAGCATATGCTTGAAGCAAATAAGAAGGCGAATGATTTCAGTCAAGACACTGCAAGTGAACAAGCTCGGGAAATGGGCAAAGAGAGCAAGGAAAGGGAAAATGAACATGAAATTGATAAAACAAACCTAGAAAAAGAAGCAGAACAAGAAAAGGGTGAATATAAAGAAATACAGCATTCAGATCAAAATGATGCGGCGAGGGATGAAGATAAGATTGTAGCTGAAAATATAGAAAATGGAACCTGTGGAGGACCTGAGCCAATGGAGATCTCCCAAAGCTTCACAGTTTTGCCTAGTGAGATTCCAACTTGTGAAGTAAAAATTTTGGAAGGTCATACCTCTGAGGTTTTCGCTTGTGCATGGAATCCATCAGGCTCGCTTCTTGCATCTGGATCTGGAGATTCGACAGCTCGGATTTGGAAAATTACAGAAGGACCTATTAACACTAGCGTACAGAATGAACCAATAAATGTTGTGGTGCTAAGGCACTTTAAAGGAAGGACTAGTGAGAAAAGCAAGGATGTGACGACACTTGACTGGAATGGGGATGGGACATTACTGGCAACTGGTTCTTATGATGGTCAGGCAAGAATATGGAGTAGAGATGGAGACTTGAAGAGCACATTAAACAAGCATAAAGGTCCAATCTTCTCTTTGAAATGGAATAAGAAGGGGGATTATCTTCTTAGCGGCAGCGTTGATAAAACTGCTATTGTATGGGATATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCACCCACTCTTGATGTAGATTGGCGAAACAATGTTTCGTTTGCAACATGTTCCACAGATAACATGATATATGTTTGCAAAATTGGAGAGAATCGGCCCATCAAAACTTTCTCGGGGCATCAGGGTGAAGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGATCACACTGCCAAGTACTCAACATGA 1293 0.4091 MISITSAELNYLIFRYLHESGFTHSAFALGYEAGIDKSRIDGNLVPPGALVTFIQKGIQYIELEANLSGSDADTDDDFSFLQPLDLITKDPKELHNMVKAKRENLRQHMLEANKKANDFSQDTASEQAREMGKESKERENEHEIDKTNLEKEAEQEKGEYKEIQHSDQNDAARDEDKIVAENIENGTCGGPEPMEISQSFTVLPSEIPTCEVKILEGHTSEVFACAWNPSGSLLASGSGDSTARIWKITEGPINTSVQNEPINVVVLRHFKGRTSEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGDLKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSFLASCSDDHTAKYST 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 430 - -
Pral5205g00010 430 Pfam LisH 8 33 IPR006594 GO:0005515
Pral5205g00010 430 SMART Lish 5 37 IPR006594 GO:0005515
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 251 - -
Pral5205g00010 430 PANTHER WD40 REPEAT PROTEIN 4 427 IPR045183 GO:0003714|GO:0016575
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Pral5205g00010 430 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 430 IPR001680 GO:0005515
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 352 - -
Pral5205g00010 430 MobiDBLite consensus disorder prediction 127 172 - -
Pral5205g00010 430 Gene3D - 204 428 IPR015943 GO:0005515
Pral5205g00010 430 SMART WD40_4 350 388 IPR001680 GO:0005515
Pral5205g00010 430 SMART WD40_4 391 430 IPR001680 GO:0005515
Pral5205g00010 430 SMART WD40_4 208 247 IPR001680 GO:0005515
Pral5205g00010 430 SMART WD40_4 308 347 IPR001680 GO:0005515
Pral5205g00010 430 SMART WD40_4 263 306 IPR001680 GO:0005515
Pral5205g00010 430 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Pral5205g00010 430 CDD WD40 211 427 - -
Pral5205g00010 430 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Pral5205g00010 430 SUPERFAMILY WD40 repeat-like 201 426 IPR036322 GO:0005515
Pral5205g00010 430 MobiDBLite consensus disorder prediction 113 172 - -
Pral5205g00010 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Pral5205g00010 430 FunFam WD40 repeat-containing protein HOS15 204 428 - -
Pral5205g00010 430 Pfam WD domain, G-beta repeat 393 427 IPR001680 GO:0005515
Pral5205g00010 430 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Pral5205g00010 430 Pfam WD domain, G-beta repeat 267 306 IPR001680 GO:0005515
Pral5205g00010 430 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Pral5205g00010 430 Coils Coil 137 166 - -
Pral5205g00010 430 Coils Coil 102 122 - -
Pral5205g00010 430 Gene3D - 2 90 - -
Pral5205g00010 430 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Pral5205g00010 430 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Pral5205g00010 430 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5205g00010 Pral-Chr5205 63011 66235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5205g00010 230 423 U-box Gene Family AT2G33340 25.490 1.16e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5205g00010 K04508 - gmx:100783690 687.952