Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5204g00005 ATGAATAATCTATCACTCTGTTGCGCAACGGCCCCCACTCCTTCCCTTTTCCTCCGCAATCTCAGCTCACAGAGCACCCTCCATTTCTGCCCATCTCCCTCCTTCAATTTCAGAAACGCAGGGTTACTTGCCATCTCATCAAAATCCCCACTTCAAAGTTTGCCTTCACGCCGATGGCTTACCAGAGCCTGCTCCACCGCAACTTCCGAAATCGAGATGGTTAGGAATAAGGAAGGTGTTTATGCTCCCAAACAGAACAAAGTCGTAGTCTTGTGGGACCTTGATAACAAACCCCCTCGCGGACCGCCTTATCAGGCTGCCATGGCACTCAAACAGATGGCACAGCGCTTCGGTGACATTGTCGACATGTCTGCCTATGCCAATCGCCACGCATTTATCCACTTACCCCAGTGGGTTCTCCACGAACGCCGTGAACGAAAGCAAGTAGAAATTCTGGAGCGTAAGGGAGTGGTCACGCCTTCTGATCCGTACGTTTGTGGGGTTTGCGGCCGCAAGTGTAAAACTAATTTGGACCTCAAGAAGCATTTCAAGCAGCTCCATCAGCGAGAGCGTCAGAAAAAGCTGAATCGGATGAGGTCACTTAAGGGGAAAAAGCGTCAGCGTTATAAAGAGAGGTTCATATCTGGGAATCACAAGTACAATGAAGCAGCAAGGTCTCTGCTTACCCCTAAGGTGGGATATGGGCTCGCTTCCGAACTAAGGCGTGCCGGAGTATTTGTGAAGACGGTGGAAGATAAACCGCAAGCAGCTGATTGGGCACTGAAGAGGCAGATGCAACACTCAATGAGCCGAGGGATAGATTGGTTGTTTTTGGTGTCCGACGATTCAGATTTTTCGGAGATGTTGAGGAGGGCGAGAGAGGCAAATTTGGGAACAGTAGTTGTGGGTGACTGGGACAGGGCATTAGGGCGGCATGCCGACTTATGGGTTCCTTGGATTGGAGTTGAGAATGGAGACCTTGCAGAGATAGACTTAGTGCCCAAGAACAAAAGACGACAGTCTTCTGCTGAAGATGATGGTTTCTTTTCAATATCGCATGATGATGGAGATACTTTAGTTACGAGCGATTTGGATGGAATCGTAGACGAGCTTGTTGCAATGAGAACCGAGTTTAATGATCTGAGAAATGCAACATTTTCGGACGAGGATGAGGAACAAGGATGGGTTTCTGAAGAACTTGATGAAAATTATATGTTAGTGATTGATGAGGATGAGGAAACAGAAGATGGGCTCTATTGA 1260 0.481 MNNLSLCCATAPTPSLFLRNLSSQSTLHFCPSPSFNFRNAGLLAISSKSPLQSLPSRRWLTRACSTATSEIEMVRNKEGVYAPKQNKVVVLWDLDNKPPRGPPYQAAMALKQMAQRFGDIVDMSAYANRHAFIHLPQWVLHERRERKQVEILERKGVVTPSDPYVCGVCGRKCKTNLDLKKHFKQLHQRERQKKLNRMRSLKGKKRQRYKERFISGNHKYNEAARSLLTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDWDRALGRHADLWVPWIGVENGDLAEIDLVPKNKRRQSSAEDDGFFSISHDDGDTLVTSDLDGIVDELVAMRTEFNDLRNATFSDEDEEQGWVSEELDENYMLVIDEDEETEDGLY 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5204g00005 419 Gene3D - 81 319 - -
Pral5204g00005 419 CDD PIN_LabA-like 174 304 - -
Pral5204g00005 419 ProSitePatterns Zinc finger C2H2 type domain signature. 166 187 IPR013087 -
Pral5204g00005 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 192 IPR013087 -
Pral5204g00005 419 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 56 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5204g00005 Pral-Chr5204 42883 44787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5204g00005 4 401 C2H2 Transcription Factor Family AT5G52010 60.880 7.95e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5204g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5204g00005 - - qsa:O6P43_016041 611.683