Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5204g00003 ATGCAGTCGTGCACCATGGGAAGCATGGAGGTGCATCAGTTTGCACGTGGGCTCATGTTTGAGCACGAACCTTCCCTCACTCTGGGCTTCAAACGCTTACGCCCTCTTGCCCCCAAGCTCCACAACAACACTCACTCTCATTCCCTTTCCTCTTTCATCAGACCCGAAAGTGGCCCCAGAAAACTCCCTTCCCCTCACCCTCACCCTCACAAAGATTCGCCGCCCCAGGTGGAGGCGCACCCAGGAGGAACGAGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTACAGAGGTGGAATGCGAACTCCAAATGCTGAGCAGATAGAACAGATCACTGCTCAGCTTGGCAAATACGGCAAAATCGAAGGCAAGAATGTCTTCTACTGGTTTCAAAACCACAAGGCCCGTGAAAGACAAAAGCAGAAACGCAACCCTAATACTAGCACCACTTCTTCTACTCCTCCACCTACCACTGCCATTCCTTTAACTTTACGGACAACGGGCCAAGTAGGAGAAGGAGAGCACGAAAACCCGTTGAGGAAGAGGTGTAGGAGCCTGGCATTTGAGTGCTTTCCATTAGAAGAAAGCAGATTATTACGTAGAGATGAGGAATACAAAACCCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAAATGA 669 0.5112 MQSCTMGSMEVHQFARGLMFEHEPSLTLGFKRLRPLAPKLHNNTHSHSLSSFIRPESGPRKLPSPHPHPHKDSPPQVEAHPGGTRWNPTQEQIGILEMLYRGGMRTPNAEQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNPNTSTTSSTPPPTTAIPLTLRTTGQVGEGEHENPLRKRCRSLAFECFPLEESRLLRRDEEYKTLELFPLHPEGK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5204g00003 222 MobiDBLite consensus disorder prediction 139 166 - -
Pral5204g00003 222 Pfam Homeodomain 84 143 IPR001356 GO:0003677
Pral5204g00003 222 SMART HOX_1 81 148 IPR001356 GO:0003677
Pral5204g00003 222 MobiDBLite consensus disorder prediction 61 75 - -
Pral5204g00003 222 FunFam WUSCHEL-related homeobox 4 83 150 - -
Pral5204g00003 222 Gene3D - 83 148 - -
Pral5204g00003 222 PANTHER WUSCHEL-RELATED HOMEOBOX 4 9 222 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Pral5204g00003 222 CDD homeodomain 84 145 IPR001356 GO:0003677
Pral5204g00003 222 MobiDBLite consensus disorder prediction 148 166 - -
Pral5204g00003 222 SUPERFAMILY Homeodomain-like 79 149 IPR009057 -
Pral5204g00003 222 ProSiteProfiles 'Homeobox' domain profile. 79 144 IPR001356 GO:0003677
Pral5204g00003 222 MobiDBLite consensus disorder prediction 39 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5204g00003 Pral-Chr5204 26135 27340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5204g00003 9 170 Wox Gene Family AT1G46480 55.435 7.81e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pral5204g00003 Homeodomain 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5204g00003 - - pcin:129317065 266.929