Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5204g00001 ATGGAAGAGCCTCAATGCTCCAGAGCCATTTTGCCTGCCTCACTCCCACCCGGTTGCCGTTTCTATCCTTCTGAAGAGCAGCTCCTCTGTTACTATTTATCCAACAAGAACGCCGGCGGTAATTTCCATGGTTGCGATCTGATCAGGGAGATTGACCTGTACGATTACGATCCTTCCCGATTGCCTGAAATCGCGTGCTTTTCCTATGGTTATCGAGGAAGGAAGAGGCATTGGTACTGTTATACTGCCAGGGTTTTGAAGGGTGCTAGAGGGAAGACTAGGATGGTCAAGACCGGGTATTGGATGAGAAAGGGAGGGGCTAGGAATGTTTTGAATGGCGGTGGGAATGTTGTCCTGGGCACCAGGACCACTTTCGTTTTCTATCTGGGGAGTTCCTCCAAGAACGCTAGCAGGACGAATTGGATGTTGTATGAGTATGCATTAGTTGATCATCTTAAGGCCTCATTTGTTATTTGTCGAGTGTTTTCTAAAGCATGTCATAAGAATAGTGTGTCAGAGAATGGTATTTGTTCTTGTGCAGAGGAAAGTTTCTCGGCTATACGTCACATCGGCATTCAGCATGATGGATATGTTCCACCTGATATGGTTGAGACTCAAATGCGTGGCGATGGCTCCATTGATAGAAAGATTCCAGTGTCTCCCTTAACACCTCCTAGTGAACTAGATGACAATCAAATTGCGGCTGCATCAGCTTCTGTTGCTACTTTCCAGTGTTGTGCAGGTCCTCAAGACAGTCAAACGCAGGAAAATGTTTCTGGACTTCCTGGTGGTGGTGCAATATTTGTTGGGGAATTGGCATCTCAGCAAGATTTGCTTTCGATTCTAGAGGAGGATTTCATTGAGTTGGATGATCTAGCTTGA 882 0.4615 MEEPQCSRAILPASLPPGCRFYPSEEQLLCYYLSNKNAGGNFHGCDLIREIDLYDYDPSRLPEIACFSYGYRGRKRHWYCYTARVLKGARGKTRMVKTGYWMRKGGARNVLNGGGNVVLGTRTTFVFYLGSSSKNASRTNWMLYEYALVDHLKASFVICRVFSKACHKNSVSENGICSCAEESFSAIRHIGIQHDGYVPPDMVETQMRGDGSIDRKIPVSPLTPPSELDDNQIAAASASVATFQCCAGPQDSQTQENVSGLPGGGAIFVGELASQQDLLSILEEDFIELDDLA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5204g00001 293 Gene3D NAC domain 24 168 IPR036093 GO:0003677|GO:0006355
Pral5204g00001 293 SUPERFAMILY NAC domain 11 164 IPR036093 GO:0003677|GO:0006355
Pral5204g00001 293 ProSiteProfiles NAC domain profile. 15 164 IPR003441 GO:0003677|GO:0006355
Pral5204g00001 293 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 218 - -
Pral5204g00001 293 Pfam No apical meristem (NAM) protein 16 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5204g00001 Pral-Chr5204 17234 20879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5204g00001 5 183 NAC Transcription Factor Family AT1G52890 34.392 2.51e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5204g00001 NAM 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5204g00001 - - pcin:129295489 464.536