Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5202g00024 ATGGCTCTTCTGCTAGACAATTGCGATGCCATATTGCTGTCCCTTGACTCCCACAAGTCGGTGCCCGCTCCCTTCCTCACCAAGACCTACCAGCTCGTCGATGATCCCGCCACCGATCACATCGTCTCCTGGGGGGAAGACGACACCACTTTCGTCGTTTGGCGCCCCCCCGAGTTCGCCCGCGATCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATTGTGCCGGACCGGTGGGAGTTCGCGAATGAATTCTTTAAGAAGGGAGAGAAGCACTTGCTGTGCGAGATCCACCGCAGGAAAACGGCTCAGCCTCATCATCATCAGAACCACCACGGCGTCGGCGTCCCCTCTTTCTTTCCCTTTCCTTCCAGGCTCAGCATCTCTCCTCCCAGCGACTCCGACGACCAGCACAATTGGTGTGACTCGCCGCCGCTCACTTCTCCGGCTCCTGTTTCTTCCCTCATCAACGGCACCAACTACAACTCTTCCTTCACCGCTCTTTCCGAGGACAACGAAAGGCTCAGACGAAGTAACAACATGCTCATGTCCGAGCTCGCACACATGAAGAAGCTTTATAACGACATCATCTACTTCGTTCAGAACCATGTCAAACCAGTCCCTCCGAGCAGTTCCTACCCTTCCTCTTTGCTCTCTCCACCTATGACCACCACCACCCCCACTGGTTCCATGGTGCAAAGGCCCCTGAACCAGCTTTTGGGGTACTATTCCATGAACAATAAGCAAACTCCGCCTATTGTGAACTCACCTACCAACACATCAAAGAGCTCCATAACCATAGTTGAAGACCCCAGCAGTAACAGCTGCAAGACCAAGCTCTTTGGTGTATCGCTTCAGTCTAAGAAAAGGGTGCACCCTGAGTACGGTTTTAATCCCTCCAATTCATCGGACACCAGCAAGGCTCGTTTCGCTTTGGAAAAGAATGACTTGGGCTTGAATCTCATGCCTCCTTCGACTTGTTAG 1026 0.5273 MALLLDNCDAILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPHHHQNHHGVGVPSFFPFPSRLSISPPSDSDDQHNWCDSPPLTSPAPVSSLINGTNYNSSFTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVPPSSSYPSSLLSPPMTTTTPTGSMVQRPLNQLLGYYSMNNKQTPPIVNSPTNTSKSSITIVEDPSSNSCKTKLFGVSLQSKKRVHPEYGFNPSNSSDTSKARFALEKNDLGLNLMPPSTC 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5202g00024 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 261 IPR027725 -
Pral5202g00024 341 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5202g00024 341 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5202g00024 341 FunFam Heat stress transcription factor B-4 17 115 - -
Pral5202g00024 341 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pral5202g00024 341 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5202g00024 341 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5202g00024 341 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5202g00024 341 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5202g00024 341 Gene3D - 17 116 IPR036388 -
Pral5202g00024 341 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5202g00024 Pral-Chr5202 162604 163990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5202g00024 1 340 HSF AT1G46264 57.258 3.23e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral5202g00024 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5202g00024 K09419 - gmx:100781389 523.087