Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5202g00023 ATGGACTCGACGACGCAGCCTCCCCAGTTCTCAGCAGCTCATTACATCGAAGATTATGAAGCGACGGGCTTGCCTGTGCCGCCACCTGAGCTCTGTGGAACTACACCAGCGATCGGCAAACCTAACTGGTGGTCACTCGCAAGTACAACAAGCACATCATCGTCGCTGGGAAACCCTACGCCACAACAGCAAGAGCAAGACTTGACGGAAAGAGGGAAGAACCCCATGAGGGAGATGATATTTAGGATAGCAGCGATGCAGCCAATACACATAGACCCGGAGTCAGTGAAGCCTCCAAAGAGGAGGAAGGTCAAGATATCAAAGGACCCTCAAAGCGTGGCGGCTCGCCATCGCAGAGAAAGAATCAGCGAGAGAATAAGGATATTGCAGAGATTGGTGCCAGGTGGCACTAAAATGGACATCGCCTCTATGTTAGACGAAGCTGTTCACTACCTCAAATTCCTGCAGTCCCAGGTTCACTCCCTCCAACGAGCAACCTCAAACAATACCCCACCACCACTCCCTCTCTTCATGTCCTCTCCCCCCAATCCTTCCTCTAATTATCTTTCTCTGCATAAGCTTTCTCAACCTCCTCCTAACCCGAACCACTTTTGCTGA 618 0.5129 MDSTTQPPQFSAAHYIEDYEATGLPVPPPELCGTTPAIGKPNWWSLASTTSTSSSLGNPTPQQQEQDLTERGKNPMREMIFRIAAMQPIHIDPESVKPPKRRKVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDIASMLDEAVHYLKFLQSQVHSLQRATSNNTPPPLPLFMSSPPNPSSNYLSLHKLSQPPPNPNHFC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5202g00023 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
Pral5202g00023 205 MobiDBLite consensus disorder prediction 94 118 - -
Pral5202g00023 205 MobiDBLite consensus disorder prediction 21 72 - -
Pral5202g00023 205 MobiDBLite consensus disorder prediction 93 118 - -
Pral5202g00023 205 Gene3D - 101 170 IPR036638 GO:0046983
Pral5202g00023 205 Pfam Helix-loop-helix DNA-binding domain 116 156 IPR011598 GO:0046983
Pral5202g00023 205 SMART finulus 112 161 IPR011598 GO:0046983
Pral5202g00023 205 MobiDBLite consensus disorder prediction 163 182 - -
Pral5202g00023 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 166 IPR036638 GO:0046983
Pral5202g00023 205 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 192 IPR045843 GO:0003700|GO:0006355
Pral5202g00023 205 FunFam BHLH transcription factor 109 172 - -
Pral5202g00023 205 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5202g00023 Pral-Chr5202 155653 156390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5202g00023 76 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.500 7.04e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5202g00023 HLH 4.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5202g00023 - - pcin:129317624 244.202