Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5187g00040 ATGGTTCTGGATGATCCCTTTTCTTTAACTTCGAAGAGGAGAAGGGTCACAGCGATTGATTCCATGGATGCTGAAGAAGCTAAGGCCAAGCTTGCAGCTATCAAGGAAAGGTTTGGACGAGATATCCGTGTATTTGAAACATCGCCAGTTTCTGCAGCACCAAATACTGCCACCAACAATGAGACTGATGATTTCTATGAGTTCACTGCTGAAGATTATTATCGACTGTTAGCTACTAAAAAGGACGATAAATTCTTGAAGACTCGCAAAATCCGAGAAGCAGAAGAGGCAGCTCGTAGATCAAGAATAACCAAAACTGTGATTAGAGTTCGGTTTCCTGATAATCACACATTAGAGGCTGCCTTTCACCCTTCAGAAACGCTCCAGAGCCTAGTTGATCTCCTCACCAAAGTGATTGCACAACCAGAGCAGTCATTTTATATCTATACCACTCCACCAAAGAAGCTGATTAAAGACATGTCTCAAGATTTTTATACTGCTGGCTTTTGCCCTGGGGCCATTGTATACTTTTCATACGATCCTCCCCTAGGTGAAAGCTCGAACCATACGGGGCCTTTCCTACTAGAGGATATCGTGTCTTTGAAGGGGTTGGATGTTACTAATGATCAAGGCCAGCAGTCTGAACCTGCACAGTCTGCACCAGAACCTGTTGAAGCTTCACAAACCCCTGCTGTTCAAGAACGTAAGCCTGCTGATAAAAAGCCTGTCAAGCCGAAATGGTTAAAATTGTGA 753 0.4382 MVLDDPFSLTSKRRRVTAIDSMDAEEAKAKLAAIKERFGRDIRVFETSPVSAAPNTATNNETDDFYEFTAEDYYRLLATKKDDKFLKTRKIREAEEAARRSRITKTVIRVRFPDNHTLEAAFHPSETLQSLVDLLTKVIAQPEQSFYIYTTPPKKLIKDMSQDFYTAGFCPGAIVYFSYDPPLGESSNHTGPFLLEDIVSLKGLDVTNDQGQQSEPAQSAPEPVEASQTPAVQERKPADKKPVKPKWLKL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5187g00040 250 MobiDBLite consensus disorder prediction 234 250 - -
Pral5187g00040 250 MobiDBLite consensus disorder prediction 207 250 - -
Pral5187g00040 250 ProSiteProfiles UBX domain profile. 101 177 IPR001012 GO:0005515
Pral5187g00040 250 CDD UBX2_UBXN9 106 179 - -
Pral5187g00040 250 SUPERFAMILY Ubiquitin-like 82 177 IPR029071 -
Pral5187g00040 250 MobiDBLite consensus disorder prediction 207 226 - -
Pral5187g00040 250 Gene3D - 95 177 - -
Pral5187g00040 250 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 1 250 IPR044232 GO:0032984|GO:0051117
Pral5187g00040 250 Pfam UBX domain 104 171 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5187g00040 Pral-Chr5187 157607 161448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5187g00040 36 126 C2H2 Transcription Factor Family AT2G01650 34.375 1.40e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5187g00040 K15627 - gmx:100818386 348.977