Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5187g00034 ATGAAAGATCGTCGCCGACGTGACGCCTCCGCCCTTTCATGGATCTCCTTCTTCTGGTGCACTCTCTTCGTCGTCTTCTCTTCTGCCATCTTCACCACCCTCGCCACTCTCCGTCGCTTTTATTCCCAAGAGTCGCTTCCTTCCACCGCCGTCCTCTCACGGCCAGCCTGGGTGATGCACGCCAAATCCAGCCACTCCTCCCAAACTCCGGTAATTACGGTCCGAGAAACGGTCTTGCTTCCCAATCAGGCTCTTGTTTTCCTCTATTACCCCCCGTCTTTCCGCTTTTATACCCAAGATGACATCACATGCGCATATTCCTGGCCCAACTCCTCCCCCACCCACGAGCCTCCGCTTCAGATTGAGTACACCCATGATCGCCAGCAGATGGTTCGGTGCCCCCTCCATCCACTTCGCCTCAACGTCTCCCTCGCCCTCAAATCCAAGGCTTCTTTCCGTCCCAATTATAAGTGGCACCCCCTCGTCTACGAAGCCCTGTTCGACCGGGACAACAGCACCATCGTCTTCGTCAAGGGCTTCAACCTTCGTCCCGCCAGAGAAGCTGACCCCTCCAGGTTCCAGTGCCTCTTCGGCTGGGATTTCAGCTCCCCGAAGTACCTTCTCACCTCCGACGTCATTTCGGTCGCCCAGGAGATCGTCCGCTGCAGAACCCCCTTCAGCATTCTCACCAGCCACCCCAAGGTGAGATCTTCAGTCAAGGTTTCAGTCAGGGCGGTGGGCAGAAAAGTGCCCACGATCGCCATGCCGGGCTACGTCCTCAACTTGACCCCATCCCGGAAACGCCACGTAATGTGCGTGTGCTCCATGTTACGGAACCAGGCTCGGTTCATAAAGGAGTGGATAATACCATACTCAGATCGGGCAGACAACAACAGCGATGACGACATCGCCGCCGTGATTGGGCTTCTACGGCGCGCCCGATACAACATCACACGCCACGTGTGGCCGTGGATTAAGACCCAGGAAGCCGGATTCGCGCACTGCGCATTACGGGCGCGCGATGTATGCGAGTGGGTGGGGTTCATCGACGTGGACGAGTTCTTCAACTTGAAAACAGCGGAGAACCTAGAAGAAGCGATCCTGCAGGAAACCAATGAAGTGGAGAATGCGGGGGAGATACGGACGAGCTGCTACAGTTTCGGGCCGTCGGGGCTGAAGAAGATACCGCGGGAGGGAGTGATGGTGGGTTACACTTGCAGGATGGCGGAGCGGGAGAGGCACAAGAGCATAGTGAGACCAGAAGCGCTGAACGAGAATCTGATAAATGTGGTGCACCATTTTCACCTGAGGGATGGGTATGTGGCGGTGGACGCGAACCGGAGCGCCATGGTGATAAACCATTACAAGTACCAGGTGTGGAAGGTTTTCAAGGACAAGTTCCAGAGGAGGGTGTCTGCGTATGTGGTTGATTGGAAGACAAGAGAGAACGTAGGGTCGAAGGACAGAGTACCCGGGCTAGGGAGCAGCGCAGTTGAGCCGGCCGATTGGGCGACCCGGTTTTGTGAAGTTTGGGATACGGATCTGAGGGAACGGGTAGTGGGGGCGTTCATGGACCCGAACACGCGTCTGCTTCCGTGGCAACAAAGGAAGACACCCACACCCAAACTGCACCGAGCGGAAATGGTGAGCGAAGAACAAAAACGCAGCCCGCGGAACCACAATAACCCATCAAGAGGAAATGGAGACGGCTTGGGCGGTATCTTCAGCCCCAGATTCAAATCAGCGGCTGCTTTGGCTGGCTGGGATGAGGAGGCCCTCCTAGTCGCCAGCCTCGTGGTCGAGGATACCCCCGACAGAGCTTCCAAGCATGATAAACGCTTTGATCTTAACATCAAGACTCCACCCACCAATTCAAGAAGAGCTCAGAGGAGTCCGCAATCAATCCCGGTTACTGTTCTTGACCTTGACCAAGATGAAACTCCCAGAAAGGATAATCTAAAGAAGAAGAAAGAAAACAAAACTAGTGCTAACGAAGCGGGAGGGAATATTTTGACCCAGCAGAACTCTGGTTCTTCTCCTTCGGAATCTGCTCTTCCCTGCATTGATAAACTGAGGGAGGAGCTTTCCTGCGCGGTTTGTTTGGAGATATGCTTTGAACCAAGCACCACTCCTTGTGGACACAGCTTTTGCAGAAAATGCCTTCGATCTGCGGCGGATAAATGTGGAAGAAAGTGCCCAAAATGCAGACAACTGATTAGCAATGGACGATCTTGCACCGTGAACACAGTTCTTTGGAACACAATACAGCTCCTTTTTCCCAAGGAAGTGGAAGCAAGGAAAGCAGCAGGTGCCTTGAATATTCGAGAAGCTCAGCAGCGCCCGAGTCCAGAAACAGCATTCTACAATAACCTGAGGAACCAGCAAGCTCACGCGAACATCGGAGGCGAACATCGGAGGCTCCAGGCAGAGGAACAACTAGTGGGAGGAAGAGTGATCACTGCAACTCAAGATGAGGATGAAGACGCTGCATTGGTAAGAAGGTTGCTGCGGAGGGAGGGAAATGGGATGGTTCAGAATAATCAGACCCCGCCATCATCGTCTTCAAGAGGGAGGTCAAGAAGAAGGATAACGAGCCAAGACGAGGATGCTGCCTTGGCTCTGAGGTTGCAGAGGGAAGAGTTTATGCAGGCTTTCAGGGGAAGCCAAGTACGTTCGGACACGAGTGGGTCAATGTCAATGTCTTCAGCGAGAGCAAATTTGAGGGCCATGGCATCCAGAGCCATCAATCTTCGAGTTAGAGACCGAAGATCATAA 2775 0.5387 MKDRRRRDASALSWISFFWCTLFVVFSSAIFTTLATLRRFYSQESLPSTAVLSRPAWVMHAKSSHSSQTPVITVRETVLLPNQALVFLYYPPSFRFYTQDDITCAYSWPNSSPTHEPPLQIEYTHDRQQMVRCPLHPLRLNVSLALKSKASFRPNYKWHPLVYEALFDRDNSTIVFVKGFNLRPAREADPSRFQCLFGWDFSSPKYLLTSDVISVAQEIVRCRTPFSILTSHPKVRSSVKVSVRAVGRKVPTIAMPGYVLNLTPSRKRHVMCVCSMLRNQARFIKEWIIPYSDRGXDNNSDDDIAAVIGLLRRARYNITRHVWPWIKTQEAGFAHCALRARDVCEWVGFIDVDEFFNLKTAENLEEAILQETNEVENAGEIRTSCYSFGPSGLKKIPREGVMVGYTCRMAERERHKSIVRPEALNENLINVVHHFHLRDGYVAVDANRSAMVINHYKYQVWKVFKDKFQRRVSAYVVDWKTRENVGSKDRVPGLGSSAVEPADWATRFCEVWDTDLRERVVGAFMDPNTRLLPWQQRKTPTPKLHRAEMVSEEQKRSPRNHNNPSRGNGDGLGGIFSPRFKSAAALAGWDEEALLVASLVVEDTPDRASKHDKRFDLNIKTPPTNSRRAQRSPQSIPVTVLDLDQDETPRKDNLKKKKENKTSANEAGGNILTQQNSGSSPSESALPCIDKLREELSCAVCLEICFEPSTTPCGHSFCRKCLRSAADKCGRKCPKCRQLISNGRSCTVNTVLWNTIQLLFPKEVEARKAAGALNIREAQQRPSPETAFYNNLRNQQAHANIGGEHRRLQAEEQLVGGRVITATQDEDEDAALVRRLLRREGNGMVQNNQTPPSSSSRGRSRRRITSQDEDAALALRLQREEFMQAFRGSQVRSDTSGSMSMSSARANLRAMASRAINLRVRDRRS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5187g00034 925 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 767 IPR013083 -
Pral5187g00034 925 Pfam Glycosyltransferase family 92 267 476 IPR008166 -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 644 663 - -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 534 577 - -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 664 684 - -
Pral5187g00034 925 PANTHER UNCHARACTERIZED 23 527 - -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 842 860 - -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 839 870 - -
Pral5187g00034 925 Pfam Zinc finger, C3HC4 type (RING finger) 698 736 IPR018957 GO:0046872
Pral5187g00034 925 Coils Coil 361 381 - -
Pral5187g00034 925 SUPERFAMILY RING/U-box 690 761 - -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 619 641 - -
Pral5187g00034 925 ProSiteProfiles Zinc finger RING-type profile. 698 737 IPR001841 -
Pral5187g00034 925 SMART ring_2 698 736 IPR001841 -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 541 560 - -
Pral5187g00034 925 MobiDBLite consensus disorder prediction 612 684 - -
Pral5187g00034 925 ProSitePatterns Zinc finger RING-type signature. 713 722 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5187g00034 Pral-Chr5187 130564 135348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5187g00034 622 800 C2H2 Transcription Factor Family AT5G39550 27.717 9.17e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5187g00034 - - pcin:129302497 1414.82