Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5187g00006 ATGGCTTCCGTTGTGGGATCGCCATCTTCCTCTTCTCCTTCAAAGCTCCTTCTCAGACCTTCACTGCCCTCTTCATCACTTTCCGCCTCTACGCACCTCTTCCTCTCCAATCCCACCTCAACTCCCAAAACCCTATCTTCCAAACTCTACTCTGCCGTCTCGTCCTCCTCTTTCGTCGTCGGTGAATCTCCCATTTTCTGTCCCTCCCTTCTCCCTTCGTCCGCATTCGGAGGTTTCTCCTCCGGCCGGCGGTCCCTGGTCGTCCGAGCAGCCAGAGGGAAATTCGAGAGAAAGAAACCACACGTTAATATAGGTACAATCGGTCATGTTGACCATGGAAAGACTACTTTGACGGCTGCTCTTACCATGGCTTTGGCCTCTATGGGAAATAGTGCGCCCAAGAAATACGACGAAATTGATGCAGCACCGGAGGAAAGAGCCCGAGGGATCACGATCAATACTGCTACTGTGGAATACGAGACTGAAAGCAGGCACTATGCCCATGTAGATTGTCCTGGACATGCTGATTATGTGAAGAATATGATCACCGGTGCGGCACAAATGGATGGTGCTATTTTGGTTGTATCGGGTGCTGATGGACCAATGCCTCAGACCAAAGAGCATATTTTGTTGGCGAAACAAGTGGGTGTGCCTAATTTGGTAGTTTTCTTGAACAAGCAGGATCAGGTTGATGATGATGAGCTTCTTCAACTAGTGGAGTTGGAAGTCCGGGAGCTTTTGAGCATCTATGAATTCCCTGGTGATGATGTGCCTGTAGTTTCAGGTTCGGCTTTGTTGGCTTTGGAGGCACTGATGGCCAACCCGAATATTAAAAGAGGGGAGAATCAGTGGGTGGATAAAATTTATGAATTGATGGATGCTGTTGATAGCTACATACCAATTCCTCAGCGTCAGACTGATTTACCTTTCCTTATGGCAATTGAAGATGTGTTTTCAATTACTGGTCGCGGTACTGTGGCGACAGGGCGCGTTGAGAGGGGCAAAGTTAAGGTTGGAGACTCTGTGGATATAGTGGGTCTTAGGGATACCCGGACTACTACAGTTACTGGGGTTGAAATGTTTCAGAAAACACTTGATGAAGCGCTTGCAGGTGATAATGTGGGGCTTTTGCTTAGGGGTATTCAGAAAACAGACATTCAAAGAGGAATGGTTATTGCCAAACCGGGCACCATCACACCCCATTCAAAGTTCACTGCTATTGTTTATGTGTTGAAAAAAGAGGAGGGAGGGAGGCATTCGCCATTCTTTGCTGGATACAGGCCGCAATTCTACATGAGAACTACTGATGTCACTGGGAAGGTTTCTAAGATCATGAATGATAAGGATGAAGAGTCTAAGATGGTTATGCCTGGGGACCGTGTGAAGATGGACGTGGAGCTAATTTTTCCAGTAGCTTGTGAACAAGGAATGAGATTTGCAATTAGAGAAGGTGGGAAGACCGTTGGGGCTGGTGTCATCCAAACCATCATTAAATGA 1497 0.4729 MASVVGSPSSSSPSKLLLRPSLPSSSLSASTHLFLSNPTSTPKTLSSKLYSAVSSSSFVVGESPIFCPSLLPSSAFGGFSSGRRSLVVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNLVVFLNKQDQVDDDELLQLVELEVRELLSIYEFPGDDVPVVSGSALLALEALMANPNIKRGENQWVDKIYELMDAVDSYIPIPQRQTDLPFLMAIEDVFSITGRGTVATGRVERGKVKVGDSVDIVGLRDTRTTTVTGVEMFQKTLDEALAGDNVGLLLRGIQKTDIQRGMVIAKPGTITPHSKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSKIMNDKDEESKMVMPGDRVKMDVELIFPVACEQGMRFAIREGGKTVGAGVIQTIIK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5187g00006 498 NCBIfam elongation factor Tu 91 498 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pral5187g00006 498 Gene3D - 91 302 IPR027417 -
Pral5187g00006 498 PANTHER ELONGATION FACTOR TU-RELATED 88 497 - -
Pral5187g00006 498 NCBIfam small GTP-binding protein domain 102 235 IPR005225 GO:0005525
Pral5187g00006 498 CDD EF_Tu 100 302 IPR041709 -
Pral5187g00006 498 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 99 303 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 FunFam Elongation factor Tu 305 433 - -
Pral5187g00006 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 318 IPR027417 -
Pral5187g00006 498 Gene3D Translation factors 305 433 - -
Pral5187g00006 498 Pfam Elongation factor Tu C-terminal domain 397 496 IPR004160 -
Pral5187g00006 498 Pfam Elongation factor Tu domain 2 324 392 IPR004161 GO:0005525
Pral5187g00006 498 Hamap Elongation factor Tu [tuf]. 90 498 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pral5187g00006 498 FunFam Elongation factor Tu 437 497 - -
Pral5187g00006 498 Gene3D Translation factors 437 497 - -
Pral5187g00006 498 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 140 155 IPR031157 -
Pral5187g00006 498 CDD EFTU_II 310 396 IPR033720 -
Pral5187g00006 498 FunFam Elongation factor Tu 90 302 - -
Pral5187g00006 498 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 497 IPR009001 -
Pral5187g00006 498 CDD EFTU_III 399 493 - -
Pral5187g00006 498 PRINTS GTP-binding elongation factor signature 167 177 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 PRINTS GTP-binding elongation factor signature 147 155 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 PRINTS GTP-binding elongation factor signature 183 194 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 PRINTS GTP-binding elongation factor signature 103 116 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 Pfam Elongation factor Tu GTP binding domain 99 300 IPR000795 GO:0003924|GO:0005525
Pral5187g00006 498 SUPERFAMILY Translation proteins 304 400 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5187g00006 Pral-Chr5187 14752 16373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5187g00006 97 498 Eukaryotic Initiation Factors Gene Family AT5G60390 30.735 1.40e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5187g00006 K02358 - qsa:O6P43_004710 773.467