Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5183g00030 ATGGAGAAACAGGTGGTGGAAAACCTATGGAAGGGTGAGAGAGAAGCTCAGATTCAAGCAGCAGTGGAGCTTACTAGATTAAGCAGCAAGCAGAGGCACAAGTTGGCAGAAAATGGAATAATGGTGCCTCTGATTTCTATGCTCCATTCTCAAGATCACGAAGCCATTGAAGCTTCTCTCTGTGCTCTGCTCTGTCTTGCCTTTGGCAGTGAACGAAACAAGATTCGGATCGTCAGGTCTGGAGCTTTACCAGTGTTATTGAATCTCCTCCAATGCCAAAGCCAACCACTCGTAGAACTAACACTAGCTGCGATGCTAACTCTTTCTTCTTGCAAAGCAAATAAGCTCGCACTATCTTCATCTGGGGCCATCCAATTACTATTACAAATTCTCAATGGCCATTATGAAAGTTGCACAAACACTCAATCCCAGCTTGACGCTATAGCCACACTTCATAACCTCTCAACCTGTGAAGAGATAACACCTCTGCTAGTCTCTTCTGGTATAACAATGTCCTTACTTGAACTAATGCACAACTCAGGAAAATCAAGTGAGACGGCTGAGAAAGCAATTGGGTTGCTGGAAAACGTTGTGCATTCATCAGAGAGAGCATTAAGCGAGGCTGCTAGCATAGGAGGGGCTCTAAGGATAGTGGTTGAGACTATTGAAGACGGGTCCATGATAGGGAAAGAGCATGCGGTAGGGATACTGCTTCTGATATGCAAGAGTTGCAGAGAGAAATACAGAGGAATGATATTGAGAGAAGGAGTGATGCCTGGTCTGCTTCAGTTAAGTGTGGATGGAACACAGAGAGCAAAAGGGATGGCTCGAGAATTGTTGTTGCTTCTGAGGGATTGCTCCAATTATGGTTCAACAAGTGGTAAGAAGATGAATCATGTGATTGTACAACAGATAATGCAGGAGATTGATGAGGAAGGTGAGGAATTGGCTGGGAGTACTTTGAGATTGGTGGAGGAGATGATTGCCAAGCTCAATACATGA 1002 0.4451 MEKQVVENLWKGEREAQIQAAVELTRLSSKQRHKLAENGIMVPLISMLHSQDHEAIEASLCALLCLAFGSERNKIRIVRSGALPVLLNLLQCQSQPLVELTLAAMLTLSSCKANKLALSSSGAIQLLLQILNGHYESCTNTQSQLDAIATLHNLSTCEEITPLLVSSGITMSLLELMHNSGKSSETAEKAIGLLENVVHSSERALSEAASIGGALRIVVETIEDGSMIGKEHAVGILLLICKSCREKYRGMILREGVMPGLLQLSVDGTQRAKGMARELLLLLRDCSNYGSTSGKKMNHVIVQQIMQEIDEEGEELAGSTLRLVEEMIAKLNT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5183g00030 333 Gene3D - 138 285 IPR011989 -
Pral5183g00030 333 FunFam U-box domain-containing protein 4 3 201 - -
Pral5183g00030 333 Gene3D - 1 137 IPR011989 -
Pral5183g00030 333 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Pral5183g00030 333 SUPERFAMILY ARM repeat 4 315 IPR016024 -
Pral5183g00030 333 PANTHER U BOX DOMAIN-CONTAINING 4 286 - -
Pral5183g00030 333 Pfam Armadillo/beta-catenin-like repeat 71 105 IPR000225 GO:0005515
Pral5183g00030 333 FunFam U-box domain-containing protein 4 205 322 - -
Pral5183g00030 333 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 212 IPR000225 GO:0005515
Pral5183g00030 333 SMART arm_5 157 199 IPR000225 GO:0005515
Pral5183g00030 333 SMART arm_5 28 68 IPR000225 GO:0005515
Pral5183g00030 333 SMART arm_5 111 156 IPR000225 GO:0005515
Pral5183g00030 333 SMART arm_5 70 110 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5183g00030 Pral-Chr5183 191692 193676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5183g00030 3 285 U-box Gene Family AT2G23140 32.414 1.85e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5183g00030 - - qsa:O6P43_004678 467.233