Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5183g00025 ATGGAATCACCTATTAACGACCCTGCTGTTGACGGAGAAAGCAACGATGCGAGGTCCTTTGGCCACAGAGAAGAGGAGGAGGATAAGTCTCAGCCTCTTACCGGTGATGGGGCGAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTTAAGCACTTTGGTAAATATGGCGAGATCACGGACTCTGTAATAATGAAGGACAGGAAGACTGGGCAACCGCGTGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTGGTAGATAAGGTCATCGAGGATACTCATGTTATCAATGGCAAACAAGTGGAAATTAAACGTACAATACCAAGAGGAGCTGTTGGCTCCAAGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCAACCGTGACTGAAGATGAGTTTAGAGACTTCTTTACTCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAATCGTTCACGTGGCTTTGGGTTTATTACTTTTGACTCTGAGGAAGCTGTTGAAGATCTCCTGGCTAAGGGGAACAAAATAGAGTTTGCTGGGGCTCAGGTGGAAATAAAGAAGGCTGAGCCAAAGAAACCAAACCCACCGCCGGCCTCCTCCAAGCGCTATAATGAGTCAAGATCTTCATTTGGTGGTGGGTACGGAGATGCTTATGATGGATTTGGTGGTGGCTTTGGTGTTGGGGGATATAGGTCAAGTGGTGTCTATGGTGGTAGGGGTGGTTCCTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCTATGGGACCTTATAGAGGAGATCCCACCCTTGGGTACTCCGGTCGATATGGAGGCGGGTTTAGCAGAGGTTATGACCTTGGAGGATATGGTGGACCTAGTGATAGTTATGGGGGATACGGTGGTGTTGGTTCTTCAGGTGCTTATGGAAGTGGCTATGGCCAGCTTGGGGGCGGATATGGCAGTGGTGGCGGTGGTGGTGTTGGAGGTTCCTTTTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATACCATCCCTACGGAAGATAG 1104 0.4801 MESPINDPAVDGESNDARSFGHREEEEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLAKGNKIEFAGAQVEIKKAEPKKPNPPPASSKRYNESRSSFGGGYGDAYDGFGGGFGVGGYRSSGVYGGRGGSYGGYGGEFGGYGGYAGAMGPYRGDPTLGYSGRYGGGFSRGYDLGGYGGPSDSYGGYGGVGSSGXAYGSGYDXQLGGGYGSGGGGGVGGSFYGSRGGYGGAGSGRYHPYGR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5183g00025 369 MobiDBLite consensus disorder prediction 1 42 - -
Pral5183g00025 369 SMART rrm1_1 42 113 IPR000504 GO:0003723
Pral5183g00025 369 SMART rrm1_1 130 203 IPR000504 GO:0003723
Pral5183g00025 369 SUPERFAMILY RNA-binding domain, RBD 125 237 IPR035979 GO:0003676
Pral5183g00025 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 122 242 - -
Pral5183g00025 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 121 - -
Pral5183g00025 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Pral5183g00025 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Pral5183g00025 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 369 - -
Pral5183g00025 369 SUPERFAMILY RNA-binding domain, RBD 38 119 IPR035979 GO:0003676
Pral5183g00025 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Pral5183g00025 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Pral5183g00025 369 Gene3D - 122 237 IPR012677 -
Pral5183g00025 369 MobiDBLite consensus disorder prediction 16 32 - -
Pral5183g00025 369 Gene3D - 41 120 IPR012677 -
Pral5183g00025 369 MobiDBLite consensus disorder prediction 203 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5183g00025 Pral-Chr5183 157848 161215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5183g00025 41 195 Eukaryotic Initiation Factors Gene Family AT1G71770 27.879 6.21e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5183g00025 K12741 - gmx:100813165 408.683