Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5183g00013 ATGGCTTCTTCTTCAAGCTACTCGAATTCTCCATGTGCTGCGTGCAAGTTTCTGAGAAGGAAATGCATGCCAGACTGCATATTCGCGCCATATTTCCCACCAGAGGAACCTCAAAAGTTTGCTAATGTTCACAAAATATTTGGTGCCAGCAACGTAAGCAAGCTGCTAAACGAAGTTCAACCTCATCAGAGAGAGGACGCTGTGAACTCCCTGGCTTATGAAGCTGAGGCAAGGATTAAAGATCCTGTGTATGGCTGTGTAGGGGCCATTTCTGTGCTCCAGAGGCAAGTCATTAGGCTTCAGAAAGAACTTGATGCCACTAATGCTGATTTGATTCGCTATACCTGCAATAATGATATGCCTTCTGGTCAAGCTTCTGCAACAAGGATGAGTGATGACCAAGGAGGAGGTTCTACGTCTCTTGGTCAATCTCCTTCTGACTATTATTATCCTTCTCCTTGGAATAATAATTACTAA 477 0.4403 MASSSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNNDMPSGQASATRMSDDQGGGSTSLGQSPSDYYYPSPWNNNY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5183g00013 158 MobiDBLite consensus disorder prediction 123 158 - -
Pral5183g00013 158 Coils Coil 90 110 - -
Pral5183g00013 158 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Pral5183g00013 158 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Pral5183g00013 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5183g00013 Pral-Chr5183 80748 83179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5183g00013 1 114 AS2 family AT5G63090 86.842 1.48e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5183g00013 LOB 7.9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5183g00013 - - gmx:100306630 272.322