Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5181g00014 ATGGCTGCCACGGCAACGGCCTCTTCAGTGGGTCCAAGATATGCACCGCATGATCCGACACTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACCGGCTATCTCTACTTTTGGAATCCCGAGACTAATGTCACCCAATACGAGAGGCCTGCAAACTCAGCTGCCCTGCCAAGGTCTTCAGTGCCTAGTTCTTCAGTCCAGGTCCAACAATCATCACAAGGACCACGTCGGGACCGCAGTCCTGATTTAAATGATAGGTATGGTAGAAGCATAGTTGGTGGGCCAAATGCTGAAGCTGGATATCGGAACCATCAGAATCCAAAAGGTGGGTGTCTTGGTTCTCATAATGTTCCAAATGGAATGCACATGACGGGAAATGTGAGCTCTTCTATCAGAAGTCATGGATTATCAGATGCAGAAGTTGGATTAACTCCAGAGTCTTATCGACGTCGCCATGAAATAACTGTTTCTGGAGATAATGTCCCTCCACCTTTCACATCCTTTGGCTCTACTGGTTTTCCGTCAGAGATTCTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCAATTCAAGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGTTCAGGGAAAACTCTGGGATATTTAATTCCAGGATTTATACATCTCAAACGTGTTGGAAATGACTCCAAGCTGGGCCCCACTGTATTGGTACTGTCACCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAATCATCCAGAATTTCTTGTGCATGTTTGTATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGATCGAGGAGCAGATATTGTGGTTGCTACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCATCAGGTGTCTTACCTTGTACTGGATGAGGCTGACCGTATGCTGGATATGGGTTTTGAGCCTCAAATCAGGAAGATTGTGAAGGAAGTGCCTGCACGGCGGCAAACCCTCATGTTTACTGCAACATGGCCCAAGGAGGTTAGGAAAATTGCAGCTGATCTGTTGGTCAATCCTGTTCAGGTTAACATTGGCAACGTTGATGAACTTGTTGCTAATAAATCCATTACGCAGCATATAGAAGTATTGGCACCTTTGGAGAAACACAGACGATTGGAACAAATATTGCGGTCACAGGATCCAGGGTCAAAAATAATTGTTTTTTGTTCTACCAAGAAGATGTGTGATCAACTAGCTCGCAATCTTACACGCCAGTTTGGGGCTGCAGCCATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTCGTAGCTACTGATGTTGCTGCTCGAGGATTGGACATCAAAGATATTAGGGTCGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGACTATGTTCATAGGATTGGGAGGACCGGGAGGGCAGGAGCAACTGGCTTGGCATACACATTTTTTGGAGACCAGGATGCCAAACATGCTTTGGATCTGATCAAGATCTTGGAAGGTGCTAATCAGCGAGTTCCATCTGAACTCCGTGATTTGGCATCACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGTCGTGGGGGACGCAGTGATTCTGGATATGGAGGAAGGGGCAGTGATTCTGGATATGGAGGAAGGGGCAGTGATTCTGGATATGGAGGAAGGGGTAGTGATTCTGGATATGGGGGAAGGGGTGGGTGGGGAGCCACTCCTGGTGGACGAGGTCGTGGATCTGACTATGATTTGCAGAGGAATGATGCCCATGAGAAGTATGGTAAAGGAAGGAGTCATAGCAGGAGCCCTGATAGGAGTAGAAACTTCTGCCGTGATCGTAGCCGCAGTCGAAGTCCGAACAGGCATGAAAGGGCTGCGCCACCTTCCCAAGGTTTTAGTTTTCACCAAGCAATGATGGAACGTAGAGGGGGCAGTGATCATGACAGGAGCTTTGATCAAGATAGAAACAGGAGTCGCAGCCCTGTTAGGCATGATAGGGCACCATCTGGCCGTGAACGTTCCCCAGCTTATAGTTTTCATCAAATGATGATGATGGAACGTGGTCAACAATCTGCCTCATCGAGGCAGCAGCAGCGCGATGTTAGTAAAGACGACAGAAGTTCAAGATACACATGTAGTAGTCACTGGAACAGTTCATCATCCTCCCCTCGTGGTGGTGTGTCGGACAGAAGTCCTCGTCAGGAGTGGGGAAGATCTCCTAGAAATAAGGTGGATGATGGGAGATATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGGCATGATGCCCCAAGATGACCATGCTGCTTATGGGGTTGCGGATTAG 2430 0.4802 MAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPANSAALPRSSVPSSSVQVQQSSQGPRRDRSPDLNDRYGRSIVGGPNAEAGYRNHQNPKGGCLGSHNVPNGMHMTGNVSSSIRSHGLSDAEVGLTPESYRRRHEITVSGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSKLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPLEKHRRLEQILRSQDPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHALDLIKILEGANQRVPSELRDLASRGGGMNRSRRWGSGGRGGRSDSGYGGRGSDSGYGGRGSDSGYGGRGSDSGYGGRGGWGATPGGRGRGSDYDLQRNDAHEKYGKGRSHSRSPDRSRNFCRDRSRSRSPNRHERAAPPSQGFSFHQAMMERRGGSDHDRSFDQDRNRSRSPVRHDRAPSGRERSPAYSFHQMMMMERGQQSASSRQQQRDVSKDDRSSRYTCSSHWNSSSSSPRGGVSDRSPRQEWGRSPRNKVDDGRYGEEEEGMIPDEGMMPQDDHAAYGVAD 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5181g00014 809 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Pral5181g00014 809 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Pral5181g00014 809 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Pral5181g00014 809 Gene3D - 16 64 - -
Pral5181g00014 809 MobiDBLite consensus disorder prediction 615 656 - -
Pral5181g00014 809 FunFam probable ATP-dependent RNA helicase DDX17 137 375 - -
Pral5181g00014 809 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Pral5181g00014 809 SMART helicmild6 426 506 IPR001650 -
Pral5181g00014 809 MobiDBLite consensus disorder prediction 52 78 - -
Pral5181g00014 809 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Pral5181g00014 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 524 IPR027417 -
Pral5181g00014 809 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Pral5181g00014 809 MobiDBLite consensus disorder prediction 768 789 - -
Pral5181g00014 809 MobiDBLite consensus disorder prediction 540 809 - -
Pral5181g00014 809 CDD SF2_C_DEAD 386 515 - -
Pral5181g00014 809 CDD WW 22 51 IPR001202 GO:0005515
Pral5181g00014 809 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Pral5181g00014 809 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Pral5181g00014 809 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 139 545 - -
Pral5181g00014 809 MobiDBLite consensus disorder prediction 674 705 - -
Pral5181g00014 809 FunFam ATP-dependent RNA helicase RhlB 376 548 - -
Pral5181g00014 809 Gene3D - 377 547 IPR027417 -
Pral5181g00014 809 MobiDBLite consensus disorder prediction 1 26 - -
Pral5181g00014 809 SMART ww_5 20 53 IPR001202 GO:0005515
Pral5181g00014 809 MobiDBLite consensus disorder prediction 52 111 - -
Pral5181g00014 809 MobiDBLite consensus disorder prediction 745 762 - -
Pral5181g00014 809 Gene3D - 144 376 IPR027417 -
Pral5181g00014 809 SMART ultradead3 186 389 IPR014001 -
Pral5181g00014 809 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5181g00014 Pral-Chr5181 87245 92522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5181g00014 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 7.34e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5181g00014 K12823 - gmx:100816455 994.186