Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5180g00002 ATGGCAAATCGTTCATCACCTGCATCATCTGTGGATGAGATTCAACAAGAAATTTCTGAAGTCCAACATGAAATACAAAAGAAGAAAGAGATGTTGAAGGAATGTGAGGACAGGATGAATGAAGCAGCAGCGAAGGAAGATCAGCTTAAAATATCATTTAAAGAACTATGTGCATCGACACAAGACGAGATCAATGCCCTTGAGAAAGCGGAGAATGAACTAATGCAGATTGAACAGGACTTGCATTCAGCAGAAGAGGAGAAGGCTCATTATGATGGGATCATGCAACGCAAGGTACTCCCAGATATCAAGGAGGCAGAGGCACGCTATATGGAGTTTAAGAAGCAACGGGAGGAATACAACAAAAAGGCTTCTATAATTTGTTGTGAGGATGAACTTCAATCTTTAGGAGGTTGTGATGGCGGTACCCCAGAGCAACTCAGTGCACAGATAGAAAGACTATCTCAGAGGCTCAAGCGTGAGAGCCAAAGATACACAGAATCACTAGATGATCTTAGGACGCTGTGTGAGAAAAAAGAACGCAAGATTATGAGAAAGCAGCAAGCTTACAAAGCCTATCGAACAAAGTTAGATGCTTGCCAGAGAGCCTTGGAATTACGAAGAAACAAGTTTCGCAGAAATGCAACTTATTTGAGGCGTTTGTTGTCTTGGAAATTCAATGCCCATTTGGGAAGAAAAGGATTCAGTGGAGTTATCGCAGTCAATTATGAAGAAAAAACCCTTTCAATCAAGGTGCAGATGCCTCAAGATGCATCAGGGTGTGCTGTTCGTGACACTCGAGGCCTTTCAGGCGGGGAGCGTTCTTTTTCAACATTATGCTTTACACTGGCCCTTCATGATATGACAGAATCCCCTTTCCGCGCAATGGATGAATTTGATGTTTTTATGGATGCGGTCAGTCGAAAGATCAGCTTGGACACTCTTGTGGATTTTGCTGTGGAACAAGGATCGCAGTGGATATTTATTACCCCACACGATATTAGTATGGTAAAGCAGGGAAACAGGATTAAGAAGCAGCAAATAGCAGCTCCTCGTTCTTGA 1062 0.4275 MANRSSPASSVDEIQQEISEVQHEIQKKKEMLKECEDRMNEAAAKEDQLKISFKELCASTQDEINALEKAENELMQIEQDLHSAEEEKAHYDGIMQRKVLPDIKEAEARYMEFKKQREEYNKKASIICCEDELQSLGGCDGGTPEQLSAQIERLSQRLKRESQRYTESLDDLRTLCEKKERKIMRKQQAYKAYRTKLDACQRALELRRNKFRRNATYLRRLLSWKFNAHLGRKGFSGVIAVNYEEKTLSIKVQMPQDASGCAVRDTRGLSGGERSFSTLCFTLALHDMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWIFITPHDISMVKQGNRIKKQQIAAPRS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5180g00002 353 Coils Coil 103 123 - -
Pral5180g00002 353 Coils Coil 57 87 - -
Pral5180g00002 353 Coils Coil 11 52 - -
Pral5180g00002 353 Pfam RecF/RecN/SMC N terminal domain 23 343 IPR003395 -
Pral5180g00002 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 340 IPR027417 -
Pral5180g00002 353 Coils Coil 151 196 - -
Pral5180g00002 353 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 352 - -
Pral5180g00002 353 Gene3D - 104 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5180g00002 Pral-Chr5180 30594 39835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5180g00002 7 353 Structural Maintenance of Chromosomes family AT5G61460 62.536 3.58e-148 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5180g00002 K22804 - nnu:104598515 478.789