Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5179g00002 ATGCCTGAAAGCCAACTCTCGGGCATGATTCCCCCAAGCTTTGGTAGATTAACTAATCTATCTGATGTGTGCTTCCGCATGAATAGTTTATATGGTCTTGTTCCTCAAGAATTCAGAAATCTTTCTTCTTTAACTGTCCTTCATCTTGTTGAAAATAACTTCTATGGAGAGTTACCACCACAAGTGTTCAACGGTTGTGTAGATCAAGATTTTGGGGTGTATCCTAATCTTACTTATATTGACATTAGCTATAATAGGATACAAGGTAAGTTTCCTGCAAATTGGGGTTCTTGCGAGATCTTGCAATCTCTTCTCATGGCTAGAAACTCAATTAGTGGCACTATACCAGATGAGATTTTTCAGTTGGACCAATTAGATGAGCTTGATCTATCTTCCAACCAAATATTTAGAGGGATTCCTTCCCAAATAGGGAATTTCTTTGGGATGTCTGTTCTATCTTTGAGTAGCAACAAACTTTCAGCAAGTGCACTTATTGTTTTGTTTGTGCTACTTTTGATTTGTGTCATTCATGGTAAGAGAAACTTAAGAGCTTTAGAATATAAAGCTAGAGTCAACAGGGAAAATCCATTCTCAGTGTGGCACTTCGACGGCAAAATCATGTACGATGACATAATTGAAGCAACTGAGAACTTCCATGAGAAATACTGCATAGGTTTAGGAGCATTTGGAAAAGTCTACAAGCTGGGGGCAGTAGAGGCTTTATCATATGTGTATCATGATTGTGATCCAGCCATTGTTCATAGAGACATATCAAGCAACAACATTTTGTTGTCTTTGAATCTTGAAGCCAATGTCTCAAATTTTGGCACAGCAAGGTTCTTGAAGACTGAATCATCAATTCGAACAACATTTGCTGGCACATATGGGTATGCTACTCTAGATGCATTGGATTTTATAAGGAAGTATTATGCAGTAATTGACACATTGCTGTTGAATGGCTTATCAAATGACGATTTGAAGTTGCGTTGCTTTTCGTACTGTATAAAGGGAGGTGCTCTTCAATGGCTTCTGTGCTTACCAAAAGGAAATAATGGTGATTATGTGGAGGAGGCTAACTATATGGGTGGCAATCCCAAAAATGACCCATACTCCAACACATATAATCCAGGGTGGAGAAATCATCCTAATTTCGCTTGGAAAAATTCTACCCCTCAAAGGCCACAAGCACCACCAGGTTTCTAA 1203 0.3865 MPESQLSGMIPPSFGRLTNLSDVCFRMNSLYGLVPQEFRNLSSLTVLHLVENNFYGELPPQVFNGCVDQDFGVYPNLTYIDISYNRIQGKFPANWGSCEILQSLLMARNSISGTIPDEIFQLDQLDELDLSSNQIFRGIPSQIGNFFGMSVLSLSSNKLSASALIVLFVLLLICVIHGKRNLRALEYKARVNRENPFSVWHFDGKIMYDDIIEATENFHEKYCIGLGAFGKVYKLGAVEALSYVYHDCDPAIVHRDISSNNILLSLNLEANVSNFGTARFLKTESSIRTTFAGTYGYATLDALDFIRKYYAVIDTLLLNGLSNDDLKLRCFSYCIKGGALQWLLCLPKGNNGDYVEEANYMGGNPKNDPYSNTYNPGWRNHPNFAWKNSTPQRPQAPPGF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5179g00002 400 Gene3D Transferase(Phosphotransferase) domain 1 240 311 - -
Pral5179g00002 400 Pfam Protein kinase domain 237 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5179g00002 400 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 68 163 - -
Pral5179g00002 400 SUPERFAMILY Protein kinase-like (PK-like) 236 300 IPR011009 -
Pral5179g00002 400 Gene3D Phosphorylase Kinase; domain 1 183 239 - -
Pral5179g00002 400 Pfam Leucine rich repeat 75 135 IPR001611 GO:0005515
Pral5179g00002 400 PANTHER LEUCINE RICH REPEAT KINASE 2 236 371 - -
Pral5179g00002 400 Gene3D Ribonuclease Inhibitor 2 165 IPR032675 -
Pral5179g00002 400 ProSitePatterns Tyrosine protein kinases specific active-site signature. 252 264 IPR008266 GO:0004672|GO:0006468
Pral5179g00002 400 SMART LRR_typ_2 41 65 IPR003591 -
Pral5179g00002 400 SMART LRR_typ_2 122 146 IPR003591 -
Pral5179g00002 400 SUPERFAMILY L domain-like 4 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5179g00002 Pral-Chr5179 97949 110659 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5179g00002 192 336 Receptor kinase-like Gene Family AT4G08850 37.580 1.06e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Pral5179g00002 Pkinase 8.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5179g00002 - - gmx:100813275 157.918