Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5179g00001 ATGAGGAAGATGATGAAGAAGCTGGCTTGGAACCTTATTTTGATCTCTGTGCTTCTCCTCTCCTTCCAATTCCCGGCAGCATCAGCTCGACGACTTGGTGATCACCGTTATGTAAATCCATCACCAGCGTTCCCAAATCTTGAACTTCTTAATCTCAAATTTAATCAGCTCACTAGCCCCATACCAGAAACAATTAGATACCTCTCAAAACTACAGTTCCTTGACCTCAATCGTAATCATCTCAACGGCACTATACCTCTTTCTCTTGCTAATCTTACTCAACTTTATGAGCTTGACCTTTCACAGAATGACATAATTGGGATATTATACCCTCGTCTATTCCCTGATGGATCTGATGAACCCAAAACAAGCTTGATTGGTATAAAGTATCTTGTGCTTCAAGGCATGCTCCTTGGAGGCATAATTCCAAATGAAATAGGGAATTTGAAGCAGTTGACCGTTCTAACTCTATATCAAAATAGCTTTTATGGATCTATACCCCCGTCTTTGGGGAATTGTACACATCTAAACATTCTGTCTTTGACCGTAAACAATCTCTTAGGTGCAATTCCTCCTACTCTTGGTACACTAACCAATCTAACAGAAGTTTACTTGTTTATGAACAATTTATCCGGTCCTTTACCACAAGGATTTGAAAATCGTTCTTTTACCATGCTTGTTATCTCTGATAACAATTTCATCGGCCACTTACCGCCACAGATAAGGGTTTGGGAGTATCCCAATCTTACCTACATGGACCTGAGCTACAATAGGCTGCAAGACATAATTGACGCAACAGGGAACTTTGCTAAAAAATACTGCATTGGGGAGGGAGCTCTTGGAAAGGTTTACAAGCTGATATTACCAAGAGAGGATAAAGTATTTGCTATAAAAAAGTTGGTTAGTGAAGCTGATACCCTTGATATTGAGAGCATAAAAGCTTTTAAGAGTGAGATCAAAGCCTTGACAGAAACATGTCATCGTTTTGGCACAGCGAGATTCTTGAAGCCTGATTCATCAATTTGGATAACATTTGTTAGCACATATGGCTATGCTGCTCCTGAGCTTGCATACATAATGGTAGTGACAGAAAAAATTGATGTGTATAGCTTTGGTGTTTTGGCCATTGAAGTGCTTATGGGTGAGCATCTCGGTGAATTAATATCCTATAACAGAACAAGTGGGATGAATCAGATCAACTTCAAAGAGATTCTAGACCCTCGTTTATCATCAACAACTCATCAAAAATTGAAGAAATTGGCTTTGATTTGGCATCTAGCTCTTCAATGCCTGCAAACAAACTCTCATGCTCGGCCAACCATGTGA 1326 0.3967 MRKMMKKLAWNLILISVLLLSFQFPAASARRLGDHRYVNPSPAFPNLELLNLKFNQLTSPIPETIRYLSKLQFLDLNRNHLNGTIPLSLANLTQLYELDLSQNDIIGILYPRLFPDGSDEPKTSLIGIKYLVLQGMLLGGIIPNEIGNLKQLTVLTLYQNSFYGSIPPSLGNCTHLNILSLTVNNLLGAIPPTLGTLTNLTEVYLFMNNLSGPLPQGFENRSFTMLVISDNNFIGHLPPQIRVWEYPNLTYMDLSYNRLQDIIDATGNFAKKYCIGEGALGKVYKLILPREDKVFAIKKLVSEADTLDIESIKAFKSEIKALTETCHRFGTARFLKPDSSIWITFVSTYGYAAPELAYIMVVTEKIDVYSFGVLAIEVLMGEHLGELISYNRTSGMNQINFKEILDPRLSSTTHQKLKKLALIWHLALQCLQTNSHARPTM 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5179g00001 441 Pfam Leucine rich repeat 45 105 IPR001611 GO:0005515
Pral5179g00001 441 Pfam Protein kinase domain 329 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5179g00001 441 SMART serkin_6 269 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5179g00001 441 Gene3D Ribonuclease Inhibitor 31 115 IPR032675 -
Pral5179g00001 441 Gene3D Phosphorylase Kinase; domain 1 271 327 - -
Pral5179g00001 441 FunFam Leucine-rich repeat receptor protein kinase EMS1 122 216 - -
Pral5179g00001 441 PANTHER LEUCINE RICH REPEAT KINASE 2 125 259 - -
Pral5179g00001 441 Gene3D Transferase(Phosphotransferase) domain 1 328 441 - -
Pral5179g00001 441 Gene3D Ribonuclease Inhibitor 118 270 IPR032675 -
Pral5179g00001 441 SUPERFAMILY Protein kinase-like (PK-like) 243 441 IPR011009 -
Pral5179g00001 441 SUPERFAMILY L domain-like 40 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5179g00001 Pral-Chr5179 42669 54371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5179g00001 145 271 Receptor kinase-like Gene Family AT3G28890 36.434 6.90e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral5179g00001 Pkinase 4.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5179g00001 - - pcin:129313978 328.946