Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5177g00011 ATGAATAGTAATGCGTTATCTTCTCGACGCGATACTTTCCCGGCTGGTCTTCGAGTTCTTGTCGTCGACGACGATTTGACATGGCTCAGGATTCTTGAGAAGATGCTGAAGAAGTGCTCTTACGAAGTGACCACATGCTGTTTAGCAAGAGAGGCTCTAAATTTGCTTCGTGAAAGGAAAGATGGATATGACATTGTGATCAGCGATGTAAATATGCCGGACATGGATGGTTTTAAACTTCTCGAGCATGTCGGGCTTGAAATGGATCTTCCTGTTATCATGATGTCTGTGGATGGAGAAACAAGAAGGGTGATGAAGGGCGTTCAGCATGGAGCATGTGATTATCTCCTCAAGCCCATAAGGATGAAAGAGCTGCGAAATATATGGCAGCATGTCTTCAGAAAAAGGATGCGCGAGGCAAGAGAATTTGGAAGTCTCAAGGGTTTTGAGGGCTTTCAGTTGGTGAGAAATGGAGCGGATCAATTTGATGAAGGGAACATATTTGCTATAGAAGATATGACCTCAACGAAGAAAAGGAAAAACCCAGATAGCAAACGAGATAACAAGGAATTTGGAGATCAATCTTCCACTAAGAAAGCCAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAGGCTGTGAATCAGCTTGGACTTGACAAAGTTGGTCCCAAGAAGATACTTGACTTGATGAATGTTCCATGGTTGACTCGGGATAATGTTGCTAGCCACTTGCAGAAATATCGGCTCTATTTGAGTAGGTTGCCGAAGGCTGGAGATCAAAACTCTTCCTCAAGTGGGACTCAGCATTCGGATACAGGAAGTTTCTCTTTTCAGAACCCAATAAACAAGCAGCAAAATGATGTCTCAATTGACGGCCATAAATATTCCGATGGAACGTTACAACTTCAGAATGTGGATGCGATAAGACATGAAAGTAATCTTAAGGGAATCACATCAGGGACTGCGATGGATAAAAGCACAGACTTGACTGCTAACACTCAAGATACAAATATAAGAAAGAGTGCACAGAAGATCAATGATCAGTCTTTTGCACCTCCAGACTCCGATGTAAGCCCCGCAGCATTAGAGTGTGCCAACCCTTGGAGGAAATTCCCAGAAATGCAACTCAAAAAACACCAGCCATATCTTCCAACGAAGGATCGCTTCAGGCACTTGCCATTACATGGAACAGAGCATCTCATCCAGGTTGATCAATCACAAGCAGATGCTTCAATCACATCCGACCGATCAGTAACAGAGAGAGAAACTGCTGCCTGTATTGAACCCAACCCTTTGTATGCTGATTACACGAGCGATTATGCCGGTTCTGTTAGTTCCATAGGAAGTGCTGGTGGCTTTTCTATGCAGTACAAGAGCTTTATGGGGAACGATCAATCATTAGAACCCGTTTCTGTTTCAAATTTTGCCAGGAAAACAGAAGGATTCAATCTTAATTCTGTTTCTGACCTGGAATTTCACCAACGAAACCTACTTTTAGGAGGTGAGTTCGCTTCTGCGCTTTTGGAGGAGGAGATGAAATCCTCTTGGCTACAAGGTGAACGCTGTATGAACTCAGGACCGCAGAATGTAGATATGCCGGCGTATAATGATCCAACGCTCACAGGGGAATTTCCATTTCATTTGTTTGACACAGCTGAATATTCAGCAGTAGATCAAGGCCTTTTCATAGCATGA 1704 0.4331 MNSNALSSRRDTFPAGLRVLVVDDDLTWLRILEKMLKKCSYEVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETRRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMREAREFGSLKGFEGFQLVRNGADQFDEGNIFAIEDMTSTKKRKNPDSKRDNKEFGDQSSTKKARVVWSVDLHQKFVKAVNQLGLDKVGPKKILDLMNVPWLTRDNVASHLQKYRLYLSRLPKAGDQNSSSSGTQHSDTGSFSFQNPINKQQNDVSIDGHKYSDGTLQLQNVDAIRHESNLKGITSGTAMDKSTDLTANTQDTNIRKSAQKINDQSFAPPDSDVSPAALECANPWRKFPEMQLKKHQPYLPTKDRFRHLPLHGTEHLIQVDQSQADASITSDRSVTERETAACIEPNPLYADYTSDYAGSVSSIGSAGGFSMQYKSFMGNDQSLEPVSVSNFARKTEGFNLNSVSDLEFHQRNLLLGGEFASALLEEEMKSSWLQGERCMNSGPQNVDMPAYNDPTLTGEFPFHLFDTAEYSAVDQGLFIA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5177g00011 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 304 IPR045279 GO:0009736
Pral5177g00011 567 MobiDBLite consensus disorder prediction 321 341 - -
Pral5177g00011 567 MobiDBLite consensus disorder prediction 259 298 - -
Pral5177g00011 567 FunFam Two-component response regulator 195 258 - -
Pral5177g00011 567 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Pral5177g00011 567 SUPERFAMILY CheY-like 16 140 IPR011006 -
Pral5177g00011 567 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Pral5177g00011 567 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Pral5177g00011 567 SMART REC_2 17 129 IPR001789 GO:0000160
Pral5177g00011 567 CDD REC_typeB_ARR-like 19 133 - -
Pral5177g00011 567 MobiDBLite consensus disorder prediction 173 194 - -
Pral5177g00011 567 Gene3D - 195 258 - -
Pral5177g00011 567 Gene3D - 17 190 - -
Pral5177g00011 567 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Pral5177g00011 567 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Pral5177g00011 567 PIRSF RR_ARR_type-B 1 548 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5177g00011 Pral-Chr5177 44291 48422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5177g00011 11 263 Response Regulator Gene Family AT2G25180 55.598 1.94e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral5177g00011 Response_reg 1.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5177g00011 K14491 - gmx:100797421 692.189