Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5175g00054 ATGGATATTGCGGAGGTTGAAGAAAATATGTTCGCAGCAAGTGATGCAAAGTTACATGGAGAATTGTGCAAGGCTCTTTCAGCAACATATTGCAAAGTATTGTCAATATTTCCATCTTTGGAAGCAGCTAGGCCCAGGAGCAAATCTGGGATCCAGGCACTATGTTCATTGCATGTGGCGTTAGAGAAGGCCAAGAATGTTCTTCAACATTGTTCCGAGTGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTGTTCTAAAATTTGAGAGAGCTAAATGTGCTCTTGAAAATAGTCTTAAAAGGGTGGAAGATATCGTCCCACAATCTATTGGATGTCAGATTCAAGAGATTGTGAGTGAACTTGAAAGTATGGAATTGGCACTTGACCCAATGGAGAAGCAAATTGGTGATAATTTAATTGCTTTGCTCCAGCAGGGGAGAAAGTTTAACGACTCTACTGATAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTAGGAATCACATCTTCTAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAACATATTGAAAGAGCTCGGGCTGAAGATGACAAGCGAAAGGAATCAATTGTCGCATATCTTTTACACCTCATGAGGAAATACTCTAAGTTATTTAGAAGTGAGTTTTCTGACGATAATGATTCTCAGGGTTCTACTCCTTGTTCTCCCACTGTTATGGGCTCCACGGAAGAATGTGTTGCTGGTGGTCATTCCCAAGCCTTTGACCGACAGCTCTCAAAACTTAGTTCTTTTAATTTTAAGCCAAATAATAGAAAATCAGGGCAAATGCCCCTTCCACCAGAGGAGTTAAGGTGTCCGATATCTCTGCAACTCATGTATGATCCTGTTATAATTGCTTCTGGGCAAACTTATGAGAGGGTTTGCATAGAGAAATGGTTGTGCGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGCACATGTATCATTGACCCCTAATTACTGTGTTAAGGGTCTTGTTTCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGATGGCCCTCCAGAATCTCTAGATTTTAACTACTGGAGATTAGCATTATCTGAGTCTGAATCAACAAATTCGAGATCTGTGAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGACGGGGGTCTCACAGGAAGCTGGAGAAAATGGAACTGAAATTTTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTGGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAAAGGAAATGTAAGGTGGTTGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCAAATGGGTTTGTTGAAGCACTTCTGCAGTTTCTGCAATCAGCAGTGTCTGAAGGGAATGTGACAGCTCAAGAAAGTGGAGCAATGGCCCTCTTTAACCTTGCTGTAAATAACAACAGGAATAAGCAGATCATGTTAGCGGCAGGACTATTATCATTGCTAGAGGAAATGATCTCTAATTCCTCCTCCTGTGGCTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCGTATGATTGGCATGAGTCAAGCTGTTCAGTTCCTCATCCAGCTTCTGTGTCAGCCTGACATTGAAGTCCTGTGCAAGCAAGATTCCCTTCATGCATTGTATAATCTATCTACTGTACCCTCCAATATTCCAAACCTCCTTTCATCAGGCATCATCAATGGCCTTCAATCCCTCCTTGCAGGCCAGGGTGATAGTGTGGGGACGGAAAAATGCATAGCTATTTTGATCAATTTGGCTCATTCTCAGTTGGGAAGGGAGGAAATGATATCATCTCCGGGGCTCATAGGCGCATTGGCTACCATACTGGACACGGGTGAGCTCGTTGAGCAAGAGCAAGCTCTATCTTGTCTATTAATTCTATGTAACAGGAATGAAATATGTAGCCAGATGGTCCTGCAAGAAGGTGTAATACCTGCATTGGTTTCATTATCAGTGAATGGTTCCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTGTTCAGGGAGCAGCGACAGCGAGACAATTCACCTCCCAAGACACACCAGTTTCCGCCAGAAACTGATGACATAGAGATGCCGCCTCCCGAAGCAAAACCGTTGTGTAAGTCAATGTCTAGGAGAAAAATGGGGAGGGCGCTTAGCTTTTTATGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAG 2298 0.4299 MDIAEVEENMFAASDAKLHGELCKALSATYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVVLKFERAKCALENSLKRVEDIVPQSIGCQIQEIVSELESMELALDPMEKQIGDNLIALLQQGRKFNDSTDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTVMGSTEECVAGGHSQAFDRQLSKLSSFNFKPNNRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWLCDGHNTCPKTQQKLAHVSLTPNYCVKGLVSSWCEQNGVPIPDGPPESLDFNYWRLALSESESTNSRSVNSVNSCKLKGVKVVPLEETGVSQEAGENGTEILSAQEEDTEQYLGFLKVLTEGNSWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALLQFLQSAVSEGNVTAQESGAMALFNLAVNNNRNKQIMLAAGLLSLLEEMISNSSSCGCATALYLNLSCLEEAKRMIGMSQAVQFLIQLLCQPDIEVLCKQDSLHALYNLSTVPSNIPNLLSSGIINGLQSLLAGQGDSVGTEKCIAILINLAHSQLGREEMISSPGLIGALATILDTGELVEQEQALSCLLILCNRNEICSQMVLQEGVIPALVSLSVNGSSRGREKAQKLLMLFREQRQRDNSPPKTHQFPPETDDIEMPPPEAKPLCKSMSRRKMGRALSFLWKTKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5175g00054 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Pral5175g00054 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Pral5175g00054 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
Pral5175g00054 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Pral5175g00054 765 Coils Coil 175 195 - -
Pral5175g00054 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Pral5175g00054 765 PANTHER U BOX DOMAIN-CONTAINING 23 710 - -
Pral5175g00054 765 SUPERFAMILY ARM repeat 429 704 IPR016024 -
Pral5175g00054 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Pral5175g00054 765 SUPERFAMILY RING/U-box 277 355 - -
Pral5175g00054 765 MobiDBLite consensus disorder prediction 707 733 - -
Pral5175g00054 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Pral5175g00054 765 Gene3D - 567 705 IPR011989 -
Pral5175g00054 765 SMART arm_5 500 538 IPR000225 GO:0005515
Pral5175g00054 765 SMART arm_5 539 581 IPR000225 GO:0005515
Pral5175g00054 765 SMART arm_5 454 498 IPR000225 GO:0005515
Pral5175g00054 765 Gene3D - 426 566 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5175g00054 Pral-Chr5175 327308 332417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5175g00054 1 764 U-box Gene Family AT1G24330 66.367 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5175g00054 - - gmx:100794099 1220.3