Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5175g00024 ATGGCGACTCAGATGAGTAAGAAGAGAAAGTTCGTTGCTGATGGCGTTTTCTTCGCCGAGCTGAACGAGGTTTTGACCCGAGAGCTTGCCGAGGATGGATACTCTGGTGTTGAGGTTAGAGTTACACCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACCCAGAATGTGCTTGGTGAGAAGGGGAGGAGAATCAGGGAACTGACCTCAGTGGTACAAAAGAGATTTAAGTTTCCGGAGAATAGCGTGGAGCTTTATGCTGAGAAGGTGAACAACAGGGGTCTTTGTGCTATTGCTCAGGCCGAGTCTCTTCGTTATAAGCTTCTTGGTGGTCTTGCTGTGCGGAGGGCATGTTATGGTGTTTTAAGATTTGTTATGGAAAGTGGAGCAAAGGGATGTGAGGTCATTGTAAGTGGAAAACTGAGGGCTCAGCGTGCCAAATCCATGAAGTTCAAGGATGGATATATGATTTCATCTGGTCAGCCAGTCAAGGACTATATTGATTCTGCAGTAAGACATGTTCTCCTCAGACAGGGGGTTCTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCTAAGGGAAAGCAGGGTCCTAAAACTCCTATTCCTGATGTTGTCACAATCCACCCTCCAAAGGATGAAGAAGAATACATCCGGCCTGGTGCTGTTGTGGCAGCTGATATGGATGTCCCAGTCGTGCCTGTCGCTTGA 717 0.4756 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPIPDVVTIHPPKDEEEYIRPGAVVAADMDVPVVPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5175g00024 238 Pfam KH domain 20 93 IPR004044 GO:0003723
Pral5175g00024 238 CDD KH-II_40S_S3 5 95 - -
Pral5175g00024 238 Gene3D - 93 219 IPR036419 -
Pral5175g00024 238 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Pral5175g00024 238 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Pral5175g00024 238 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Pral5175g00024 238 FunFam 40S ribosomal protein S3 1 92 - -
Pral5175g00024 238 FunFam 40S ribosomal protein S3 93 228 - -
Pral5175g00024 238 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Pral5175g00024 238 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Pral5175g00024 238 Gene3D - 1 91 IPR015946 -
Pral5175g00024 238 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pral5175g00024 238 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5175g00024 Pral-Chr5175 127759 130500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5175g00024 1 237 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.920 1.69e-153 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5175g00024 K02985 - mnt:21386181 432.565