Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5175g00023 ATGCCGGTGAATCTCACGCCCAACGCGATCGCGGCTATTGTGGCCGGCGACGTGAACTCGAAGCCGCTCGTCCAGGTCCTGGACATCAAGTTGATTTCTAATAATTCGCAGCAGGAGAGGTACCGGCTTCTTATTTCTGATTCCGCTTCCACTCAGCACGCTATGCTCGCGACTCAGCTGAATAACCGAGTTAGAACCGGACGAGTCAAGAAAGGTTCCGTCGTTCAGCTGATTGAGTACATTTGCAGTCAAATTCAGAACCGCAAGATCATTGTGGTGCTCAACATGGAAACTATAATTCCAGATTGTGAGATTATCGGGAATCCAAACTCATTTGTGGTATCTGATTCAACGGCCCAGACAGCATTGTCTAATAACAATATGCAGAATTCATCTAGGCTTAATAATAATCGTCCGCCTGTTCAAAATTCAGGTCATGATGAGCAGAACTTCAGACCAACTGTTCAACTTCCATTCCGACCACCACCAGTTTACAAAAGCCATGGTGCAATTATGAAGAATGAAGCACCTGCACGGATCATTCCTATCGCTGCTTTAAATCCTTATCAAGGCCGGTGGGCTATAAAGGCAAGAGTAACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGAGGAGATGGAAAAGTTTTCTCTTTTGATCTCCTTGACTCTGATGGAGGTGAAATACGAGTAACATGCTTCAATGCTGTTGTTGACCGATTTTATAATCTAATTGAGGTTGGTAAAGTCTACTTGATATCCAAAGGTAGCTTAAAACCCGCGCAGAAGAACTTCAATCATTTGAAGAATGACTGGGAAATTTTCCTGGACTCTAATTCATCTGTGGAGCTTTGCCCAGATGAAGATGCTTCAATACCCAGACAGCAATTCTCCTTTAGGCCTATCAGTGACATTGAGAACACCGAAAGTAACTGCATACTTGATGTTATTGGGGTTGTGACATTGGTAAATCCCTCGGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAAAGACGAATTCTGAACGTAAAGGACATGTCTGGCAAGAGTGTTGAGCTAACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTTCAAGAAATGGTTGATGGTGGGTTTTTCCCAGTTCTGGCAGTCAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCTATAGGAACCATTTCTTCTACCCAACTCTTCATTAACCCAGATTTTCCTGAGGCTCATAGATTAAGAGCCTGGTTTGATGAAGGGGGGAAAGATTCAGCTTCTCTGTCCGTTTCTAAGGACATTACGCCAGGAGGACCTAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGCCTGGGGCGATCAGATAAGCCAGACTGGATAACAGTGAGGGCAACCATATCATTCATCAAGACAGATCCATTTTGTTATACAGCTTGCCCACTGATGATTGGAGACCGGCAGTGCAGTAAAAAAGTGACTAGGTCAGGAAGCAGGTGGCAATGCGATAGATGCAATCAAGAGTTTGAAGAGTGTGATTACCGTTACCTTCTTCAAGCCCAAATTCTGGATCATACGGGGATAACCTGGGTCACAGCATTCCAAGAATCAGGCGAGGAAATCTTAGGTTGCTCAGCAAAGGAGCTGTACTTATTGAAGTATAAAGATCAGGATGATGATAGGTTTGGGGACATGATCCGTGGTAAACTCTTCAACCAGTTTGTGTTTCGGCTGAAAGTCAAGGAGGAATTGTATGGTGACGAACAGAGGGTGAAGATCACAGTGGTTAAGGCAGATAAGGTGGATTATTCTTCCGAGAGTAGATACATGTTAGATTTGATTTCAAAATTTTGTAAGCAGTAA 1878 0.4377 MPVNLTPNAIAAIVAGDVNSKPLVQVLDIKLISNNSQQERYRLLISDSASTQHAMLATQLNNRVRTGRVKKGSVVQLIEYICSQIQNRKIIVVLNMETIIPDCEIIGNPNSFVVSDSTAQTALSNNNMQNSSRLNNNRPPVQNSGHDEQNFRPTVQLPFRPPPVYKSHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNLIEVGKVYLISKGSLKPAQKNFNHLKNDWEIFLDSNSSVELCPDEDASIPRQQFSFRPISDIENTESNCILDVIGVVTLVNPSVPILRKNGMETQRRILNVKDMSGKSVELTLWGDFCNREGQKLQEMVDGGFFPVLAVKSGRVNDFSGKSIGTISSTQLFINPDFPEAHRLRAWFDEGGKDSASLSVSKDITPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDPFCYTACPLMIGDRQCSKKVTRSGSRWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEILGCSAKELYLLKYKDQDDDRFGDMIRGKLFNQFVFRLKVKEELYGDEQRVKITVVKADKVDYSSESRYMLDLISKFCKQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5175g00023 625 NCBIfam replication factor-a protein 1 (rpa1) 4 621 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral5175g00023 625 SUPERFAMILY Nucleic acid-binding proteins 297 425 IPR012340 -
Pral5175g00023 625 Gene3D - 432 623 IPR012340 -
Pral5175g00023 625 CDD RPA1_DBD_B 314 421 - -
Pral5175g00023 625 FunFam Replication protein A subunit 431 622 - -
Pral5175g00023 625 Pfam OB-fold nucleic acid binding domain 194 266 IPR004365 GO:0003676
Pral5175g00023 625 FunFam Replication protein A subunit 292 430 - -
Pral5175g00023 625 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pral5175g00023 625 PANTHER REPLICATION FACTOR A 1, RFA1 193 598 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral5175g00023 625 MobiDBLite consensus disorder prediction 126 151 - -
Pral5175g00023 625 FunFam Replication protein A subunit 179 288 - -
Pral5175g00023 625 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pral5175g00023 625 SUPERFAMILY Nucleic acid-binding proteins 446 622 IPR012340 -
Pral5175g00023 625 Gene3D - 179 289 IPR012340 -
Pral5175g00023 625 CDD RPA1_DBD_A 182 285 - -
Pral5175g00023 625 MobiDBLite consensus disorder prediction 126 158 - -
Pral5175g00023 625 CDD RPA1_DBD_C 449 621 IPR047192 -
Pral5175g00023 625 Gene3D - 3 113 IPR012340 -
Pral5175g00023 625 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Pral5175g00023 625 SUPERFAMILY Nucleic acid-binding proteins 179 293 IPR012340 -
Pral5175g00023 625 Pfam Replication protein A OB domain 303 407 IPR031657 -
Pral5175g00023 625 Pfam Replication factor-A C terminal domain 465 614 IPR013955 -
Pral5175g00023 625 FunFam Replication protein A subunit 4 113 - -
Pral5175g00023 625 Gene3D - 291 431 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5175g00023 Pral-Chr5175 123137 126378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5175g00023 26 621 Core DNA Replication Machinery Family AT2G06510 70.732 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5175g00023 K07466 - zju:107409151 1024.23