Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5173g00004 ATGGAGGAAGCAAGACGCAGATGGCTTCGACCCAATGAGATTCATGCCATACTCTGCAATTACAAACATTTTACCATCCATGTCAAGCCAGTGACTTTGCCGAGAAGTGGTACTATTGTATTATTTGACAGGAAGAAGCTTAGGAACTTTCGTAAAGATGGCCACAATTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTACGCACATGGTGAAGAAAACCCACACTTTGTCCGCAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCATATTGTCCTTGTTCATTATCGTGAAATACATGAGTCACAAGGTTCTCCAGCCACACCTGTATATTCAAATGCTAGTTCTCCCTCTGATCCAACAACACCATGGGTAATACCAGAAGAATTGGATTCTGGGATCGACAAGGCATGCACTGGTGAGCTGAATGACAATTCAACTGTTAAAAGTCACGAACTGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTACAAATGATCTTAACACCTCTACTACTTCCACTCCGACTGAAGGAAAGGTTCCATTTCTTCATCAAGAAAAACAAATTTTACTGAATGGAAATTCAAGCAGGGTGGTCAACAATCAATCTGCGGAAATTCATTCTTTTGATATTCTGAACAATTCAATTGATGGGAACAATAGTGCTCAATACAATTTTTCTGAAAGTTTGAATCTTCAGACAGCCACCAATCAGTTAAATTCAAATGCACAGAGTGGACATTCTAGCACCATGGGTGGTGGTGATTTTGTGGGAAATATCATCAATGACACTCTGCAAAGCCAGGACAGCTTTGGAAAATGGATAAACAATATGATGGCTGATTCACCATCTTCTATTGATGACTCAGGTCTTGAATCCTCAGTTTCATCTGTTCATGATTCATACTCTTCAGGGTTGGATAATCATCAATCTTCTCTGCCAGAACAATTATTTAATATCACTGATGTGTCTCCTGTCTGGGCGTGCTCTGCTGAGAAAACAAAGGTCCTAATAACGGGATTTTTTCATGATGATTATGTGCACCTTGCAAAGTCCAATCTGTTTTGTATCTGTGGGGATGTACCTGTTCCCGCAGAAATTGTTCAAGTTGGTGTGTACCGATGCTGGGTGCCACCACATTCCCCTGGTTTTGTGAATCTCTATATGAGTATTGATGGCCACAAGCCCATAAGTCAAGTTGTTAATTTTGAGTATCGTACTACTGTTTTGCAAGACCCTGCAGCTTCCATGGAAGACAGGCACAACGGGGAGGAGTTTCGACTTCAGATGAGACTTGCTTATTTGCTCTTTGCTACACAAAAGAGTCTTGACATTACCTCTAGTAAAGTATTACCTGATGCGCTGAAGGAGGCTAAGAAATTTGTCTCCAAGACATCATATATTTCCAAAAGTTGGCAATACTTGATTAAGTCTACTGAAGACCGCAAAATTCCATTTCCACAAGCAAAAGATGCCTTGTTTGAAATTGCATTGAAGACTAGACTAAAGGAATGGCTCTTGGAGAGAATTATTTTAGGTTGCCAGACTACTGAAGTTGATGCCCAAGGACAAGGCGTAATCCATTTGTGCTCGATTTTGGGATATACATGGGTCGTTTCATTATTTTCATGGTCTGGTTTTTCATTGGATTTCCGTGATAAATTTGGGTGGACAGCCCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTTGCTGCTCTATTATCTGCGGGTGCAAGGCCAAACTTGGTCACGGATCCTACTCCTCAACATCCTGGTGGATTTACTGCTGCTGATCTGGCTCAGGGGAAGGGTTATAGTGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTGGTTGAGCAGTTCAATGAAATGAGCATAGCGGGGAATATCAGTGGCTCGCTGGAAACTACCAGCACAAGGGATCCAGTAAATTCTGAGAAGCTCAGTGAGGATCAGCTGTATATGAAGGATACATTAGCAGCTTATCGGACTGCTGCTGAGGCTGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCACTAAAATTACGATCTCATGCAGTTGAACTTTTCAGTCCAGAGGCTGAAGCACGCCAAATAGTTGCAGCAATGAAGATCCAGCATGCTTTTCGAAACTTTGAGTCGAGGAAGTCTATGGCAGCTGCTGCTCACATCCAGCATACCTTTCGTACATGGAAGATGCGTAGACAATTTCTCAATATGCGTCGCCAAGCAATCAAAATTCAGGCTGCTTTCCGGGCCTTCAAGGAGCGACAGAACTACCGCAAAATTATCTGGTCTGTTGGAGTGGTTGAGAAAGCAATCCTGCGGTGGCGTTTAAAGAGACGGGGTTTCCGTGGCCTACAAGTAAATCCTGTCCAAGAAGCAGCAAGTCAGAAGGAGGAAACAGGGTTTGTTACGGAGGAGGACTTTTTCCGGACTGGCAGGAAACAAGCTGAAGAACGTGTTGAGAGAGCTGTAGTACGTGTTCAAGCTATGTTCCGCTCTAAGAAAGCGCAAGTAGATTACAGGAGGATGAAACTAGCCCATAATCAAGCAAAGCTGGAACTAGAATATGAAGACCTCCTTAATTCTGAGGTGGATATGGGAGTGCTGGCATAG 2697 0.4283 MEEARRRWLRPNEIHAILCNYKHFTIHVKPVTLPRSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEENPHFVRRCYWLLDKSLEHIVLVHYREIHESQGSPATPVYSNASSPSDPTTPWVIPEELDSGIDKACTGELNDNSTVKSHELRLHEINTLEWDDLVVTNDLNTSTTSTPTEGKVPFLHQEKQILLNGNSSRVVNNQSAEIHSFDILNNSIDGNNSAQYNFSESLNLQTATNQLNSNAQSGHSSTMGGGDFVGNIINDTLQSQDSFGKWINNMMADSPSSIDDSGLESSVSSVHDSYSSGLDNHQSSLPEQLFNITDVSPVWACSAEKTKVLITGFFHDDYVHLAKSNLFCICGDVPVPAEIVQVGVYRCWVPPHSPGFVNLYMSIDGHKPISQVVNFEYRTTVLQDPAASMEDRHNGEEFRLQMRLAYLLFATQKSLDITSSKVLPDALKEAKKFVSKTSYISKSWQYLIKSTEDRKIPFPQAKDALFEIALKTRLKEWLLERIILGCQTTEVDAQGQGVIHLCSILGYTWVVSLFSWSGFSLDFRDKFGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTPQHPGGFTAADLAQGKGYSGLAAYLSEKSLVEQFNEMSIAGNISGSLETTSTRDPVNSEKLSEDQLYMKDTLAAYRTAAEAAARIQAAFREHSLKLRSHAVELFSPEAEARQIVAAMKIQHAFRNFESRKSMAAAAHIQHTFRTWKMRRQFLNMRRQAIKIQAAFRAFKERQNYRKIIWSVGVVEKAILRWRLKRRGFRGLQVNPVQEAASQKEETGFVTEEDFFRTGRKQAEERVERAVVRVQAMFRSKKAQVDYRRMKLAHNQAKLELEYEDLLNSEVDMGVLA 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5173g00004 898 ProSiteProfiles IQ motif profile. 743 772 IPR000048 GO:0005515
Pral5173g00004 898 ProSiteProfiles CG-1 DNA-binding domain profile. 1 123 IPR005559 GO:0003677
Pral5173g00004 898 SMART CG_1_2 1 118 IPR005559 GO:0003677
Pral5173g00004 898 Gene3D - 742 790 - -
Pral5173g00004 898 FunFam calmodulin-binding transcription activator 5 508 648 - -
Pral5173g00004 898 SMART ANK_2a 578 607 IPR002110 GO:0005515
Pral5173g00004 898 FunFam Calmodulin-binding transcription activator 5 337 433 - -
Pral5173g00004 898 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 877 - -
Pral5173g00004 898 SMART iq_5 746 764 IPR000048 GO:0005515
Pral5173g00004 898 SMART iq_5 765 787 IPR000048 GO:0005515
Pral5173g00004 898 SMART iq_5 723 745 IPR000048 GO:0005515
Pral5173g00004 898 SMART iq_5 847 869 IPR000048 GO:0005515
Pral5173g00004 898 Pfam IQ calmodulin-binding motif 768 787 IPR000048 GO:0005515
Pral5173g00004 898 Pfam Ankyrin repeats (3 copies) 532 607 IPR002110 GO:0005515
Pral5173g00004 898 SUPERFAMILY Ankyrin repeat 527 639 IPR036770 -
Pral5173g00004 898 Gene3D - 510 646 IPR036770 -
Pral5173g00004 898 SUPERFAMILY E set domains 342 429 IPR014756 -
Pral5173g00004 898 ProSiteProfiles IQ motif profile. 849 877 IPR000048 GO:0005515
Pral5173g00004 898 ProSiteProfiles Ankyrin repeat region circular profile. 578 606 - -
Pral5173g00004 898 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515
Pral5173g00004 898 Pfam CG-1 domain 3 116 IPR005559 GO:0003677
Pral5173g00004 898 Gene3D Immunoglobulins 337 432 IPR013783 -
Pral5173g00004 898 ProSiteProfiles IQ motif profile. 766 790 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5173g00004 Pral-Chr5173 22316 32331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5173g00004 1 881 CAMTA Transcription Factor Family AT3G16940 54.576 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pral5173g00004 Ank_2 1.8e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5173g00004 K21596 - gmx:100793970 1264.21