Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5173g00003 ATGATGGCAAACAACTTAACGGGGCAGCTCTTGGGCTCAGAGATACATGGATTCCATACAATGCAGGAGTTGGATGTTGGAATCATTATGGAGGAAGCAAGACGCAGATGGCTTCGACCCAATGAGATTCATGCCATACTCTGCAATTACAAACATTTTACCATCCATGTCAAGCCAGTGACTTTGCCGAGAAGTGGTACTATTGTATTATTTGACAGGAAGAAGCTTAGGAACTTTCGTAAAGATGGCCACAATTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTACGCACATGGTGAAGAAAACCCACACTTTGTCCGCAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCATATTGTCCTTGTTCATTATCGTGAAATACATGAGTCACAAGGTTCTCCAGCCACACCTGTATATTCAAATGCTAGTTCTCCCTCTGATCCAACAACACCATGGGTAATACCAGAAGAATTGGATTCTGGGATCGACAAGGCATGCACTGGTGAGCTGAATGACAATTCAACTGTTAAAAGTCACGAACTGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTACAAATGATCTTAACACCTCTACTACTTCCACTCCGACTGAAGGAAAGGTTCCATTTCTTCATCAAGAAAAACAAATTTTACTGAATGGAAATTCAAGCAGGGTGGTCAACAATCAATCTGCGGAAATTCATTCTTTTGATATTCTGAACAATTCAATTGATGGGAACAATAGTGCTCAATACAATTTTTCTGAAAGTTTGAATCTTCAGACAGCCACCAATCAGTTAAATTCAAATGCACAGAGTGGACATTCTAGCACCATGGGTGGTGGTGATTTTGTGGGAAATATCATCAATGACACTCTGCAAAGCCAGGACAGCTTTGGAAAATGGATAAACAATATGATGGCTGATTCACCATCTTCTATTGATGACTCAGGTCTTGAATCCTCAGTTTCATCTGTTCATGATTCATACTCTTCAGGGTTGGATAATCATCAATCTTCTCTGCCAGAACAATTATTTAATATCACTGATGTGTCTCCTGTCTGGGCGTGCTCTGCTGAGAAAACAAAGGTCCTAATAACGGGATTTTTTCATGATGATTATGTGCACCTTGCAAAGTCCAATCTGTTTTGTATCTGTGGGGATGTACCTGTTCCCGCAGAAATTGTTCAAGTTGGTGTGTACCGATGCTGGGTGCCACCACATTCCCCTGGTTTTGTGAATCTCTATATGAGTATTGATGGCCACAAGCCCATAAGTCAAGTTGTTAATTTTGAGTATCGTACTACTGTTTTGCAAGACCCTGCAGCTTCCATGGAAGACAGGCACAACGGGGAGGAGTTTCGACTTCAGATGAGACTTGCTTATTTGCTCTTTGCTACACAAAAGAGTCTTGACATTACCTCTAGTAAAGTATTACCTGATGCGCTGAAGGAGGCTAAGAAATTTGTCTCCAAGACATCATATATTTCCAAAAGTTGGCAATACTTGATTAAGTCTACTGAAGACCGCAAAATTCCATTTCCACAAGCAAAAGATGCCTTGTTTGAAATTGCATTGAAGACTAGACTAAAGGAATGGCTCTTGGAGAGAATTATTTTAGGTTGCCAGACTACTGAAGTTGATGCCCAAGGACAAGGCGTAATCCATTTGTGCTCGATTTTGGGATATACATGGGTCGTTTCATTATTTTCATGGTCTGGTTTTTCATTGGATTTCCGTGATAAATTTGGGTGGACAGCCCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTTGCTGCTCTATTATCTGCGGGTGCAAGGCCAAACTTGGTCACGGATCCTACTCCTCAACATCCTGGTGGATTTACTGCTGCTGATCTGGCTCAGGGGAAGGGTTATAGTGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTGGTTGAGCAGTTCAATGAAATGAGCATAGCGGGGAATATCAGTGGCTCGCTGGAAACTACCAGCACAAGGGATCCAGTAAATTCTGAGAAGCTCAGTGAGGATCAGCTGTATATGAAGGATACATTAGCAGCTTATCGGACTGCTGCTGAGGCTGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCACTAAAATTACGATCTCATGCAGTTGAACTTTTCAGTCCAGAGGCTGAAGCACGCCAAATAGTTGCAGCAATGAAGATCCAGCATGCTTTTCGAAACTTTGAGTCGAGGAAGTCTATGGCAGCTGCTGCTCACATCCAGCATACCTTTCGTACATGGAAGATGCGTAGACAATTTCTCAATATGCGTCGCCAAGCAATCAAAATTCAGGCTGCTTTCCGGGCCTTCAAGGAGCGACAGAACTACCGCAAAATTATCTGGTCTGTTGGAGTGGTTGAGAAAGCAATCCTGCGGTGGCGTTTAAAGAGACGGGGTTTCCGTGGCCTACAAGTAAATCCTGTCCAAGAAGCAGCAAGTCAGAAGGAGGAAACAGGGTTTGTTACGGAGGAGGACTTTTTCCGGACTGGCAGGAAACAAGCTGAAGAACGTGTTGAGAGAGCTGTAGTACGTGTTCAAGCTATGTTCCGCTCTAAGAAAGCGCAAGTAGATTACAGGAGGATGAAACTAGCCCATAATCAAGCAAAGCTGGAACTAGAATATGAAGACCTCCTTAATTCTGAGGTGGATATGGGAGTGCTGGCATAG 2784 0.4289 MMANNLTGQLLGSEIHGFHTMQELDVGIIMEEARRRWLRPNEIHAILCNYKHFTIHVKPVTLPRSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEENPHFVRRCYWLLDKSLEHIVLVHYREIHESQGSPATPVYSNASSPSDPTTPWVIPEELDSGIDKACTGELNDNSTVKSHELRLHEINTLEWDDLVVTNDLNTSTTSTPTEGKVPFLHQEKQILLNGNSSRVVNNQSAEIHSFDILNNSIDGNNSAQYNFSESLNLQTATNQLNSNAQSGHSSTMGGGDFVGNIINDTLQSQDSFGKWINNMMADSPSSIDDSGLESSVSSVHDSYSSGLDNHQSSLPEQLFNITDVSPVWACSAEKTKVLITGFFHDDYVHLAKSNLFCICGDVPVPAEIVQVGVYRCWVPPHSPGFVNLYMSIDGHKPISQVVNFEYRTTVLQDPAASMEDRHNGEEFRLQMRLAYLLFATQKSLDITSSKVLPDALKEAKKFVSKTSYISKSWQYLIKSTEDRKIPFPQAKDALFEIALKTRLKEWLLERIILGCQTTEVDAQGQGVIHLCSILGYTWVVSLFSWSGFSLDFRDKFGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTPQHPGGFTAADLAQGKGYSGLAAYLSEKSLVEQFNEMSIAGNISGSLETTSTRDPVNSEKLSEDQLYMKDTLAAYRTAAEAAARIQAAFREHSLKLRSHAVELFSPEAEARQIVAAMKIQHAFRNFESRKSMAAAAHIQHTFRTWKMRRQFLNMRRQAIKIQAAFRAFKERQNYRKIIWSVGVVEKAILRWRLKRRGFRGLQVNPVQEAASQKEETGFVTEEDFFRTGRKQAEERVERAVVRVQAMFRSKKAQVDYRRMKLAHNQAKLELEYEDLLNSEVDMGVLA 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5173g00003 927 ProSiteProfiles IQ motif profile. 878 906 IPR000048 GO:0005515
Pral5173g00003 927 Gene3D - 539 675 IPR036770 -
Pral5173g00003 927 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Pral5173g00003 927 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 906 - -
Pral5173g00003 927 FunFam calmodulin-binding transcription activator 5 537 677 - -
Pral5173g00003 927 ProSiteProfiles IQ motif profile. 795 819 IPR000048 GO:0005515
Pral5173g00003 927 Pfam IQ calmodulin-binding motif 797 816 IPR000048 GO:0005515
Pral5173g00003 927 FunFam Calmodulin-binding transcription activator 5 366 462 - -
Pral5173g00003 927 Pfam Ankyrin repeats (3 copies) 561 636 IPR002110 GO:0005515
Pral5173g00003 927 Gene3D - 771 819 - -
Pral5173g00003 927 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
Pral5173g00003 927 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Pral5173g00003 927 SMART iq_5 876 898 IPR000048 GO:0005515
Pral5173g00003 927 SMART iq_5 794 816 IPR000048 GO:0005515
Pral5173g00003 927 SMART iq_5 775 793 IPR000048 GO:0005515
Pral5173g00003 927 SMART iq_5 752 774 IPR000048 GO:0005515
Pral5173g00003 927 SUPERFAMILY Ankyrin repeat 556 668 IPR036770 -
Pral5173g00003 927 SMART ANK_2a 607 636 IPR002110 GO:0005515
Pral5173g00003 927 Gene3D Immunoglobulins 366 461 IPR013783 -
Pral5173g00003 927 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Pral5173g00003 927 SUPERFAMILY E set domains 371 458 IPR014756 -
Pral5173g00003 927 SMART CG_1_2 29 147 IPR005559 GO:0003677
Pral5173g00003 927 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5173g00003 Pral-Chr5173 21966 32331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5173g00003 29 910 CAMTA Transcription Factor Family AT3G16940 54.515 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pral5173g00003 Ank_2 1.9e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5173g00003 K21596 - gmx:100793970 1307.35