Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5167g00001 ATGCTTCTAAGCTCATTACCTATACCCTATCTAATTGGAAATTTAAAAAATCTGATCAATTTAGCTTTGGATGGGAATAATTTGACTGGGTTGATTCCAAATAGAGTTAATAAATTACATAGTCTTCAACATTTAAGTCTCAGCAACAATAGATTGCAAGGGTCCATTATAAATGACCTTTGTCAACTCGAAAGTCTGAGTGAGTTGAATCTTGCAAACAACATGTTTACGGGAGCAGTTCCAGAATGTCTTGGGAAGACTTCTTTGCATCAATTAAATCTTAGCTTTAACCAGCTAGGTTCTCATTTACCTCCTTCTTTTTGGAGTCTCAAAAATATCTTGGTTTTAGATATATCTTCCAATACATTGAGTGGCATAATTTCACCAGAAGTATCAAATTTGAGAGCAATTATACTATTGAATTTGTCAAGAAACCAAATTTCAGGAAGTATACCTACAACTATGGCCACGTTGATAACTTTGCAAAAGCTATCTTTGGCTCACAACAAATTACAAGGGCCTATACCTGAATCACTAAGTGGCATGATAAGTATTGAGTTAATAGATTTTTCTCATAATCACTTGTCTGGTGCGATTCCAAAGTCCTTGGAGTCACTACTCTATCTTAAATCTATTGATCTTTCATACAATTTATTGGATGGAGAAATTCCAAACGGTGACCCTTTTCAAAATTTTACTGCTCAATCTTTTATGATGAATAAAGATCTTTGTGGAAAATCCCAACTACAAGTCCGACCGTGTAGGAGAGGAAACAAGCATATATCAAATAAAGTGATGTTGGCGATAAAATGTTCAGTGCCTATCATGGTTGTCATTTTGGTTTTTATAGGCATTGTCTTTCTAAAGCATAACAGAGATGATGCTAACTATCCAACCAATAGGGATTTAACAAATTTGGATGCACCAACTAGGATATCTTATTATGACCTTCTACAAGGAACAAATGGATTTGATGAGGGTAATCTTCTTGGTTCTGGGAGTTTTGGATCAGTATATAAAGCGATTCTTCCCAATGAAAAGATAGTTGCTGTCAAAGTATTTAACATAGACATGGAAGAAGCATTCAGAAGTTTTGATGTTGAATGTGCTGCCATGTGCAATTTACGACATCGCAATCTTATTAAAATTATCAGTAGTTGCTCTAACGATGATTTCAAGTCTCTAATCATGGAATTCATGTCAAATGGAAGCCTTGATAGATGGTTGTACTCTCATAACTACTGTTTAGATATCCTGCAAAGGTTGAATATAATGGTTGACCTGGCAGCTGCATTAGAGTATCTTCATCATGGTACTTTAACTCCAATTGTTCATTGTGACATAAAACCAAGTAATGTTTTGTTGGATGAAGACATGGTGGCTCACCTGAGTGATTTTGGTATAGCTAAACTATTAAGTGAAGGACTGTTGGAAACTCATACAAAAACATTAGCTATAGTTGGTTATATGGCACCAGAGTATGGATCAAAAGGAGTGATTTCTTTCAAAGGAGATGTGTATAGCTATGGCATTGTTCTAATGGAGATGTTTACCAGGAAGAAGCCAACTGATGAAATGTTTGTTGAAGGTCTTGGTTTAAAAGATTGGGTTAGCAAATCAACACCACATTCAATCATCAATATTCTAGATGTTAATTTGCTGCATCAAGGAAATCCAAATATCAGCAATATATTACCACATATATCATCAATTTTTAACTTGGCATTAAGTTGTTGCACTGAATCACCTGAGGCGCGAATAATGATGACGGATGTTGTAGTCTCATTAAAAAAGATAAGGTCATATTTACGTAAAATATTAGAGACGTGCCACTAG 1836 0.3491 MLLSSLPIPYLIGNLKNLINLALDGNNLTGLIPNRVNKLHSLQHLSLSNNRLQGSIINDLCQLESLSELNLANNMFTGAVPECLGKTSLHQLNLSFNQLGSHLPPSFWSLKNILVLDISSNTLSGIISPEVSNLRAIILLNLSRNQISGSIPTTMATLITLQKLSLAHNKLQGPIPESLSGMISIELIDFSHNHLSGAIPKSLESLLYLKSIDLSYNLLDGEIPNGDPFQNFTAQSFMMNKDLCGKSQLQVRPCRRGNKHISNKVMLAIKCSVPIMVVILVFIGIVFLKHNRDDANYPTNRDLTNLDAPTRISYYDLLQGTNGFDEGNLLGSGSFGSVYKAILPNEKIVAVKVFNIDMEEAFRSFDVECAAMCNLRHRNLIKIISSCSNDDFKSLIMEFMSNGSLDRWLYSHNYCLDILQRLNIMVDLAAALEYLHHGTLTPIVHCDIKPSNVLLDEDMVAHLSDFGIAKLLSEGLLETHTKTLAIVGYMAPEYGSKGVISFKGDVYSYGIVLMEMFTRKKPTDEMFVEGLGLKDWVSKSTPHSIINILDVNLLHQGNPNISNILPHISSIFNLALSCCTESPEARIMMTDVVVSLKKIRSYLRKILETCH 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5167g00001 611 Gene3D Phosphorylase Kinase; domain 1 289 399 - -
Pral5167g00001 611 Pfam Protein kinase domain 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5167g00001 611 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Pral5167g00001 611 Pfam Leucine rich repeat 17 75 IPR001611 GO:0005515
Pral5167g00001 611 ProSiteProfiles Protein kinase domain profile. 324 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5167g00001 611 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Pral5167g00001 611 FunFam Serine-threonine protein kinase plant-type 304 399 - -
Pral5167g00001 611 SMART serkin_6 324 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5167g00001 611 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 609 - -
Pral5167g00001 611 Gene3D Ribonuclease Inhibitor 3 262 IPR032675 -
Pral5167g00001 611 SUPERFAMILY L domain-like 7 246 - -
Pral5167g00001 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Pral5167g00001 611 SUPERFAMILY Protein kinase-like (PK-like) 302 603 IPR011009 -
Pral5167g00001 611 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 130 252 - -
Pral5167g00001 611 PANTHER OS04G0122200 PROTEIN 7 601 - -
Pral5167g00001 611 Gene3D Transferase(Phosphotransferase) domain 1 400 608 - -
Pral5167g00001 611 FunFam Leucine-rich repeat receptor protein kinase EMS1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5167g00001 Pral-Chr5167 55528 57707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5167g00001 8 609 Receptor kinase-like Gene Family AT3G47570 39.905 1.57e-136 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral5167g00001 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5167g00001 - K13420 pcin:129285519 855.899