Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5166g00008 ATGGGTACTATGAATCCACAGCCACTGCAAGCACGGCCTTTCGAGGACGGAGAACTGCAACTGGTGCAGGTTCCCATGCAGGTGGATGGTGTCGAAGATGGATTGAATGCTCAGTGTGTCAATGGACGTCGTGACGAGGTCAGTGACGGGGTAGAAGAAGCTCGGGTGAGTTCTGGGTTATCGGGGACAAATGGTTGTGCTTTCAAGTCTCGAACCAGTGAACTCACCATTTCATTTGAAGGCGAGGTCTATGTCTTCCCCGCTGTTACGCCGGAAAAGGTACAGGCCGTATTGCTATTGTTGGGAGGGTGTGAGATGTCCAGCCCCTGTAGTGCCCCCAGCGCTGATCTTTTGCTGCAACAGAACTATCAGAACATGATGGAAATTAACGATACTTCCCGGGGTTCAAAGCTTTCACGGAGATTTGCATCCCTTGTTAGGTTTAGGGAAAAGCGAAAAGAGAGATGTTTTGAGAAAAAAATTCGATACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATCAAAGGAATGTGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAATGGTGCTGCTTGTTCAGAATCTAATGAACGCAAATGTCAGCATTGTGGAACTAGTGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGGCTGATGTGGGCAAATAAGGGGACTCTGAGGGATCTCAGCAAAACAGGAAAGGTCTCTTCTTTGGAACAAAATGAACTGGATACTTCAGCTGAAAGGAAGCCTTCCATGACTACACCAGAAAATTCTTGTCCTGAGCAGAATGAGGAAGGAAGCCCCAAGGAGACAAAACCTGAGCTGTTGGAATCTGGACAGTCACCCAAGGGGGCGAATGGGCAGTATACACTTGAAACTGCCGAAGCAGTTACTGACAATTTATCCATTCAAGTGGAGAACCTTGATGTTAATCTGCATGAACAGGATACTCTTGAAGATCTTGCTGATGCATCCGGAACGGATTTTGAGATTCCTACAGGTTTTGATGAGCAGATTGACATTGATGATTCCAACTTGAAGACCTACTGGTTATGA 1122 0.4706 MGTMNPQPLQARPFEDGELQLVQVPMQVDGVEDGLNAQCVNGRRDEVSDGVEEARVSSGLSGTNGCAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGCEMSSPCSAPSADLLLQQNYQNMMEINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSSNGAACSESNERKCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVSSLEQNELDTSAERKPSMTTPENSCPEQNEEGSPKETKPELLESGQSPKGANGQYTLETAEAVTDNLSIQVENLDVNLHEQDTLEDLADASGTDFEIPTGFDEQIDIDDSNLKTYWL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5166g00008 373 MobiDBLite consensus disorder prediction 252 284 - -
Pral5166g00008 373 MobiDBLite consensus disorder prediction 252 309 - -
Pral5166g00008 373 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Pral5166g00008 373 Pfam GATA zinc finger 210 246 IPR000679 GO:0006355|GO:0043565
Pral5166g00008 373 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Pral5166g00008 373 PANTHER GATA TRANSCRIPTION FACTOR 28 5 352 IPR045280 GO:0006355
Pral5166g00008 373 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Pral5166g00008 373 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Pral5166g00008 373 Pfam CCT motif 141 183 IPR010402 GO:0005515
Pral5166g00008 373 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 256 - -
Pral5166g00008 373 CDD ZnF_GATA 209 252 IPR000679 GO:0006355|GO:0043565
Pral5166g00008 373 Gene3D - 201 263 IPR013088 GO:0006355|GO:0008270
Pral5166g00008 373 SMART tify_2 68 103 IPR010399 -
Pral5166g00008 373 ProSiteProfiles GATA-type zinc finger domain profile. 204 262 IPR000679 GO:0006355|GO:0043565
Pral5166g00008 373 Pfam tify domain 71 102 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5166g00008 Pral-Chr5166 74226 85337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5166g00008 74 253 Tify Gene Family AT1G51600 55.556 3.05e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5166g00008 CCT 5.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5166g00008 - - gmx:102669848 472.241