Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5163g00040 ATGTGGGTTTACGTCAATTCGATCGCGTTCATTGAAATGGGTGAGGAGGTTAAGGCAATTGTTCCCGAGTCTGTGTTGAAGAAGAGGAAGAGAGAAGAGGAATGGGCATTGGCCAAGGCACAGGAGACCGAAGCTGCAAAAAAGAAGAGAGCTGAGAGCCGAAAGCTGATCTACAACAGAGCTAAGCAGTATGCCAAGGAGTATCAGGAGCAGGAAAAGGAGTTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAACTCTTGTTTATTGTTCGCATCCGTGGTATTAATGCCATGCACCCAAAGACAAGGAAAATCTTGCAGCTCTTGCGTTTGAGGCAGATATTCAATGGCGTGTTTCTTAAAGTCAACAAGGCTACAATGAACATGCTTCACAGGGTCGAACCTTATGTGACCTATGGGTATCCAAACTTGAAGAGTGTAAGAGAACTCATTTACAAGAGGGGCTATGGTAAGATCAACAAACAGAGAATTGCTTTAACTGACAATTCTATCATTGAGCAGGCACTGGGTAAGTATGGAATCATCTCCACTGAAGATCTTATCCATGAGATCATAACAGTTGGACCCCACTTCAAGGAGGCCAACAACTTCCTTTGGCCCTTTAAACTCAGGGCACCTTTGGGTGGACTAAAGAAGAAAAGAAACCACTATGTTGAAGGTGGTGATGCTGGAAACCGGGAGAATTTCATCAATGAGCTCATTAGGAGAATGAACTAA 768 0.4362 MWVYVNSIAFIEMGEEVKAIVPESVLKKRKREEEWALAKAQETEAAKKKRAESRKLIYNRAKQYAKEYQEQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKINKQRIALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLRAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5163g00040 255 FunFam 60S ribosomal protein L7 201 255 - -
Pral5163g00040 255 SUPERFAMILY Ribosomal protein L30p/L7e 96 255 IPR036919 -
Pral5163g00040 255 PANTHER 60S RIBOSOMAL PROTEIN L7 19 255 IPR039699 -
Pral5163g00040 255 ProSitePatterns Ribosomal protein L30 signature. 115 147 IPR018038 -
Pral5163g00040 255 Gene3D - 197 255 IPR036919 -
Pral5163g00040 255 Gene3D - 96 196 IPR036919 -
Pral5163g00040 255 Pfam Ribosomal L30 N-terminal domain 21 92 IPR012988 -
Pral5163g00040 255 Pfam Ribosomal protein L30p/L7e 97 147 IPR016082 -
Pral5163g00040 255 NCBIfam 60S ribosomal protein uL30 22 255 IPR005998 GO:0000463|GO:0003735|GO:0022625
Pral5163g00040 255 Coils Coil 54 85 - -
Pral5163g00040 255 CDD Ribosomal_L7_archeal_euk 96 255 IPR035808 -
Pral5163g00040 255 FunFam 60S ribosomal protein L7 96 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5163g00040 Pral-Chr5163 406778 408833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5163g00040 16 255 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.417 3.55e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5163g00040 K02937 - gmx:100813342 429.869