Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5163g00007 ATGGCTCCAGACTCCGTCTCTGATCTTCTCTGCGAAATTCTCTTCTTTTCTTCTTTCTTCTTTTGTTTTGTGGCCACCGAACTTCTCTGCATCGAGTATCCATTTTTCGCTGCTCTGTTTTTCCAACACGAAGAAGATGATCATCATCAGCATGCCCCACTCATTGTTTCTGAATATCCTCAACGCTCCAGGTTGCCCAAGTTCATCAATCCCTCCTTCATCATTTCTCTACTCACAAACAATTCCTCTTCCCTCCTTTTACCACCACCACCACCACCACCACCACCACCACCACCATCATCATCTTCTTCTTCTTCTTCTGCTTCTTCTCCTTGGCCTAACCCAGAAACTAAGCATGCGAAGTCTGCAATTAAAATTGAGGAACCTTTGGAAGTCATCTGTGAAATCTGTGCAGAAACTAAAAGACCTAATCAGATGATCAAGAACCAGACATGCCGCCATTCTTATTGCTCTGATTGTATGACAAAACATGTGGCCACGAAAGTCCAAGACACCATAACAGCAGTTCCATGTCCTGGGCTGGGTTGTAAGAGTGTTTATGAGCTTGAAGCTTGTCGGCCTTGGATTCCCAAGGACTTACTAGAAAGATGGGATAAGGCTCTGTGTGAGGCTCTTTTTCTGCAAGTGCCTAAATTTTATTGCCCCTTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAATGAGATGGATCAAACAGCTGCAAGGGAAACAGAGTGCCCTATTTGCCATAGATTGTTCTGTCCAAGGTGTAGTGTCCCATGGCATCATGGAGTTGACTGTGAGGAATACCAGGGACTGAATGAGAATGAGAGACAGAGGGAAGATCTGCTTGTGAGACAGCTTGTTAAAGATAAGAAATGGGGAAGGTGTCCCAAGTGTAAGTTCTATGTGGAGAAGACTCAGGGATGCTTGCACATCACTTGCAGGTGCAAATATGAGTTTTGTTACAAGTGTGGAAAAGAATGGAATTCTTCTCATGGAGGCTGCCAAAGATATTAG 1020 0.4431 MAPDSVSDLLCEILFFSSFFFCFVATELLCIEYPFFAALFFQHEEDDHHQHAPLIVSEYPQRSRLPKFINPSFIISLLTNNSSSLLLPPPPPPPPPPPPSSSSSSSSASSPWPNPETKHAKSAIKIEEPLEVICEICAETKRPNQMIKNQTCRHSYCSDCMTKHVATKVQDTITAVPCPGLGCKSVYELEACRPWIPKDLLERWDKALCEALFLQVPKFYCPFKDCSAMMLVENEMDQTAARETECPICHRLFCPRCSVPWHHGVDCEEYQGLNENERQREDLLVRQLVKDKKWGRCPKCKFYVEKTQGCLHITCRCKYEFCYKCGKEWNSSHGGCQRY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5163g00007 339 CDD Rcat_RBR_unk 293 329 - -
Pral5163g00007 339 ProSiteProfiles Zinc finger RING-type profile. 134 179 IPR001841 -
Pral5163g00007 339 SUPERFAMILY Formin homology 2 domain (FH2 domain) 88 98 - -
Pral5163g00007 339 FunFam RBR-type E3 ubiquitin transferase 130 215 - -
Pral5163g00007 339 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 329 IPR031127 GO:0004842|GO:0016567
Pral5163g00007 339 CDD BRcat_RBR_unk 217 270 - -
Pral5163g00007 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 212 IPR013083 -
Pral5163g00007 339 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Pral5163g00007 339 SUPERFAMILY RING/U-box 278 336 - -
Pral5163g00007 339 Gene3D - 264 339 - -
Pral5163g00007 339 Pfam Zinc finger, C3HC4 type (RING finger) 134 179 IPR018957 GO:0046872
Pral5163g00007 339 SMART ibrneu5 202 267 IPR002867 GO:0008270
Pral5163g00007 339 SMART ibrneu5 277 336 IPR002867 GO:0008270
Pral5163g00007 339 MobiDBLite consensus disorder prediction 85 120 - -
Pral5163g00007 339 ProSiteProfiles TRIAD supradomain profile. 130 339 IPR044066 -
Pral5163g00007 339 MobiDBLite consensus disorder prediction 85 102 - -
Pral5163g00007 339 FunFam RBR-type E3 ubiquitin transferase 269 339 - -
Pral5163g00007 339 SUPERFAMILY RING/U-box 131 211 - -
Pral5163g00007 339 SUPERFAMILY RING/U-box 206 271 - -
Pral5163g00007 339 Pfam IBR domain, a half RING-finger domain 217 267 IPR002867 GO:0008270
Pral5163g00007 339 Pfam IBR domain, a half RING-finger domain 284 335 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5163g00007 Pral-Chr5163 63123 64457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5163g00007 134 326 C3H Transcription Factor Family AT2G19610 29.208 1.05e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5163g00007 K11975 - qsa:O6P43_027978 328.561