Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5163g00006 ATGCCTGACAATTGCCCTACCCCAGAAACTGACCCCGTGAAATGCTCAAATGAAACGGGTGAGTCCTCGCAAGTCATCTGCGAAATCTGTGCAGAAACTAAAGAGGCTTCCCAGATGTTCAGAAATCAGAGATGTCACCACTCGTTTTGTTCTGATTGTGTCACTAAACAAGTGGCCATAAAAATTCAGGATGGTATAACGGTAGTTTCCTGTCCTGGTTTGGATTGTAAAAGTGTTCTTGAGCTTGATGCTTGTCGGCCATGGATTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTTTGTGCGAAGCTCTGTTTCTGGCAGCCCCTAAATATTACTGTCCCTTTAAGGATTGCTCAGCTATGTTGCTCATTGAGAATGAAGAACGAGAAGATCATCAAGCTATAAGGGAAGCAGAGTGCCCTGTTTGCCACAGACTGTTCTGCGCAAAGTGTGATGTTCCATGGCATCCTGGAGTTAACTGTGAGGAATTTCAGGGAATGGATGAGAATGAGAGAAAGAGAGAAGATCTGATTGTGATAGAGCTTGCTAAAGAGCAGAAATGGAAAAGGTGTCCCAATTGTAGGTTCTTTGTGGAGAAGACAGAAGGATGCGTGCACATCGTTTGTAGGTGTCATTATGAGTTTTGCTATAGGTGTGGAGGACAATGGACTTCTACTCATGGAGACTGCGAACCAAATTAG 705 0.4468 MPDNCPTPETDPVKCSNETGESSQVICEICAETKEASQMFRNQRCHHSFCSDCVTKQVAIKIQDGITVVSCPGLDCKSVLELDACRPWIPKDLLERWDQALCEALFLAAPKYYCPFKDCSAMLLIENEEREDHQAIREAECPVCHRLFCAKCDVPWHPGVNCEEFQGMDENERKREDLIVIELAKEQKWKRCPNCRFFVEKTEGCVHIVCRCHYEFCYRCGGQWTSTHGDCEPN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5163g00006 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 105 IPR013083 -
Pral5163g00006 234 ProSiteProfiles TRIAD supradomain profile. 23 234 IPR044066 -
Pral5163g00006 234 SUPERFAMILY RING/U-box 100 166 - -
Pral5163g00006 234 CDD Rcat_RBR_unk 188 224 - -
Pral5163g00006 234 FunFam RBR-type E3 ubiquitin transferase 164 234 - -
Pral5163g00006 234 ProSiteProfiles Zinc finger RING-type profile. 27 72 IPR001841 -
Pral5163g00006 234 FunFam RBR-type E3 ubiquitin transferase 22 108 - -
Pral5163g00006 234 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 224 IPR031127 GO:0004842|GO:0016567
Pral5163g00006 234 Pfam IBR domain, a half RING-finger domain 183 230 IPR002867 GO:0008270
Pral5163g00006 234 Pfam IBR domain, a half RING-finger domain 110 162 IPR002867 GO:0008270
Pral5163g00006 234 CDD BRcat_RBR_unk 108 165 - -
Pral5163g00006 234 Gene3D - 159 233 - -
Pral5163g00006 234 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pral5163g00006 234 SMART ibrneu5 95 162 IPR002867 GO:0008270
Pral5163g00006 234 SMART ibrneu5 172 231 IPR002867 GO:0008270
Pral5163g00006 234 SUPERFAMILY RING/U-box 21 104 - -
Pral5163g00006 234 SUPERFAMILY RING/U-box 172 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5163g00006 Pral-Chr5163 45987 47195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5163g00006 20 222 C3H Transcription Factor Family AT2G19610 30.622 1.79e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5163g00006 K11975 - qsa:O6P43_027978 343.584