Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5163g00005 ATGGCTCAAGATTCCGCCTCCGATCTTCTCTGTTCTGATGATTCCTTCCTGTCAGCTCTGTTTCATGAGGATGAAGATGGTGATGGTCGCGCCCCATTTACCGATGATGAATGTGCTCAACGCTTGCAGCTTCAGGAAACCCTTTACTCTTCCTTGATCACTTCCCAAAAGCCAAACAACGATCCTTCTCCTCCTCCTCCTCCTCCTTTACTCCTTTTACCTGCGTCTTCATCACCTTCTGTTCCTTTAAAAATGGCTGACAATTGCCCTACCCCAGAAACTGACCAAGTGAAATGCTCAAATGAAACGGGCGAGTCCTCGCAAGTCATCTGCGAAATCTGTGCAGAAAATAAAGAGGCTTCCCAGATGTTCAGAAATCAGAGATGCCACCACTCGTTTTGTTCCGATTGTGTCACTAAACAAGTGGCCATAAAAATTCAGGATAGTATAACAGTAGTTTCCTGTCCTGGTTTGGATTGTAAAAGTGTTCTTGAGCTTGATGCTTGTCGGCCATGGCTTCCCAAGGAGTTGCTTGAAAGGTGGGATCAAGCTCTGTGCGAAGCTCTGTTTCTGGCAGCCCCCAAATATTATTGCCCCTTTAAGGATTGCTCGGCTATGTTGCTGATTGAGAATGAAGAAGATCATCAAGCTATAAGGGAATCAGAGTGCCCTGTTTGCCACAGGCTGTTCTGCGCAAAGTGTGATGTTCCATGGCATCCTGGAGTGGACTGTGAGGAATTTCAGGGAATGGATGAGAATGAGAAAGAGAGACAAGATCTGATTGTGAGAGAGCTTGCTAAAGAGAAGAAATGGAAAAGGTGTCCCAATTGCAAGTTCATTGTGGAGAAGACAGAAGGATGCATGCACATCACTTGTAGGTGTCACTATGAGTTTTGCTATCAGTGTGGAGAACAATGGACTTCTACTCATGGAGGCTGCGTAACAAATCAGATTATATGA 960 0.4531 MAQDSASDLLCSDDSFLSALFHEDEDGDGRAPFTDDECAQRLQLQETLYSSLITSQKPNNDPSPPPPPPLLLLPASSSPSVPLKMADNCPTPETDQVKCSNETGESSQVICEICAENKEASQMFRNQRCHHSFCSDCVTKQVAIKIQDSITVVSCPGLDCKSVLELDACRPWLPKELLERWDQALCEALFLAAPKYYCPFKDCSAMLLIENEEDHQAIRESECPVCHRLFCAKCDVPWHPGVDCEEFQGMDENEKERQDLIVRELAKEKKWKRCPNCKFIVEKTEGCMHITCRCHYEFCYQCGEQWTSTHGGCVTNQII 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5163g00005 319 SUPERFAMILY RING/U-box 105 188 - -
Pral5163g00005 319 ProSitePatterns Zinc finger RING-type signature. 129 138 IPR017907 -
Pral5163g00005 319 SMART ibrneu5 254 313 IPR002867 GO:0008270
Pral5163g00005 319 SMART ibrneu5 179 244 IPR002867 GO:0008270
Pral5163g00005 319 SUPERFAMILY RING/U-box 184 248 - -
Pral5163g00005 319 SUPERFAMILY RING/U-box 255 313 - -
Pral5163g00005 319 CDD Rcat_RBR_unk 270 306 - -
Pral5163g00005 319 CDD BRcat_RBR_unk 192 247 - -
Pral5163g00005 319 MobiDBLite consensus disorder prediction 49 87 - -
Pral5163g00005 319 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 306 IPR031127 GO:0004842|GO:0016567
Pral5163g00005 319 MobiDBLite consensus disorder prediction 59 75 - -
Pral5163g00005 319 FunFam RBR-type E3 ubiquitin transferase 106 192 - -
Pral5163g00005 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 189 IPR013083 -
Pral5163g00005 319 Gene3D - 240 318 - -
Pral5163g00005 319 Pfam IBR domain, a half RING-finger domain 194 244 IPR002867 GO:0008270
Pral5163g00005 319 Pfam IBR domain, a half RING-finger domain 263 313 IPR002867 GO:0008270
Pral5163g00005 319 ProSiteProfiles Zinc finger RING-type profile. 111 156 IPR001841 -
Pral5163g00005 319 ProSiteProfiles TRIAD supradomain profile. 107 319 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5163g00005 Pral-Chr5163 34335 36126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5163g00005 104 303 C3H Transcription Factor Family AT2G19610 28.986 4.03e-20 88.6