Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5158g00045 ATGCAAACTGGTTACAATATTAATGATCTGTACCAAGAAGCTCAAAAGCGATGGCTGAAGCCTGCAGAGGTGATGTACATTTTACAGAATCATGAACAGTATCAGATTACTCAAGAGACCCCTCAACAGCCATCCAGTGGATCCTTGTTTCTGTTTAACAGAAGAGTTCTACGCTTTTTTCGAAAAGACGGTCATAATTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGACTTAAGGTTGGAAATGTTGAAGCCTTAAATTGTTATTATGCACACGGAGAGCAGAACCCCACTTTTCAGAGGCGAAGCTATTGGATGTTGGATCCGGCTTATGAGCATATTGTTCTGGTACATTACAGAGAAACCAGTGAGGGAAGGTCTAATTCTGGACCTGTCACACAACAGTCACCAGGCTCCTCATCTGCATTTATTCAGAGTCCTAGCTCATACGCTACCCAGAAGCTGGGGTCAACATCCACGTTTGGTGATTCATATGAACCTAATCAGAGTTTTTCCAGTCCTGGATCAGTAGAATTTACATCTGATACATTCATCAAGACTAATGGAAAAAATCACTCGGATGGAACAGAGGCGGAGTCAGGAAATTCACCTGAACTTGAGGTTACTCAGGCCTTGCGCCGACTGGAGGAGCAGTTGAGTTTGAATGAGGACATCTTCAAAGAAATTGATTCCTTCAGCAGTGAGCAGGAGAACACATATGATTCTAGTCCCCAACAAAATACAATGGCAATCAACAATCAAGATGTTACTGCAGCTTGGCCTGCACTGAGTGATCAAGGCCAATCTTATGATGGACATGGTGCCAGACAAGGCCATAATTGCTCTGATGGAATTGAGAAGACTTTATACTGGAAGGAGATGCTGGATTCATGCAAGCCCCTGTCCTCAGCCAATTTGCAGGAGAAACATGTGTACAGACCGGCTGGAAATGAAAACTCACTTTCTTCTTCGGGAAGGTTACCAATTGCCAACAAGGAAAGCAGTCACTGGATAAGCTTTGGCAGTAACAATGCTGAAAAATCTGCCTTTTCACTGACTCAAGACATTCATGGAGTGGGATTTTCTCCATATTCTTCTATAGAAACTCAAGAAGCTAATTTGGACTATGCATCATTTTTTGACCAAAACCAAGTTGAAGCTCCTCTGGATGTAGATTTAAGTTTGACTGTTGCACAAAAGCAGAAGTTCACAATTAAGGAAGTATCTCCAGGATGGGGTTATGCTAATGAAGCCACGAAGGTTATCATTGTGGGATCATTTCTTTGTCCTCCTACAAGTTCTACCTGGGCTTGCATGTTTGGTGATGTTGAAGTTCCTGTTGAAATAATTCAAGATGGTGTGATCCGTTGCGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTATGCATTACTTCTGGGAATCGGGAGTCCTGCAGTGAAGTTCGTGAGTTTCAGTATCGCAGTAAGGATAGTTGCCCTCACTGCAATCCACTGGAAGCAGAATCCACTAGAAGTCCTGAAGAACTGTTATTACTTGTTAGATTTGCGCAGATAATTCTTGCTGATTCTTCTACGACGGAATCTGGAAATTATGAACTGGATAAACAGAAATTTGATGATGATTCGTGGAGCCATGTTATTGAGGCTCTTCTAGTTGGCAGTGGAACTTCATCTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCTGTCGTGGCTTTCTTCCAGATCCCACAAAAGAAATGAAGAGACAGGCTCTTCTTTGTCCAAAAAGGAGCAGGGCATTATACACATGGCTGCTGGGTTGGGTTTTGAGTGGGCTTTGAATCCCATTCTCAGCTGTGGTGTGAACATAAATTTCCGTGACATCAGTGGATGGACTGCCCTACACTGGGCTGCACGCTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCCTCTGGTGCCTCTGCTGGAGCAGTGACAGATCCAACTGCCCAAGATCCAACCGGTAAAACAGCTGCTTCTATCGCAGCCAACAGTGGGCATAAGGGTCTGGCAGGTTATCTTTCTGAGGTATCTCTAACAAGCCACTTATCTTCCCTCACCCTGGAAGAAAGCGAGCTGTCTAAAGGTTCAGCTGAGCTTGAAGCAGAGTTAACTGTAAGTACTGTCTCCACGGAGCATCTAACAGCCAGTGAAGATCAGATTTCACTCAAACATACTTTGGCTGCTGTGCGTAATGCAGCTCAGGCAGCTGCACGTATACAGTCTGCTTTTCGTGCTCATTCCTTTAGGAAAAGGATAGAGAGGGAAGCTGCCATTTCTGCAGCAGCCGCCATATCAATTCAGAAGAAATATCGAGGATGGAAAGGCCGCAAAGATTTTCTAGCATTACGTAAGAAAGTAGTGAAGATACAGGCTCATGTAAGGGGTTACCAGGCTAGAAAGCACTACAAGATTATATGTTGGGTAGTTGGGTTCTTTGACAAGGCTGTGCTACGATGGAAGAGGAAAGGAGCTGGTTTACGAGGTTTTCGACAGGAGAGAAACTCAACTGATGAAAATGAAGATGAAGACATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGAAGCAGTTGAACAGGCTGTTTCACGGGTGTTGTCCATGGTTGATTCTCCAAATGCTCGTCAACAATATCATCGCATGCTTGAAAAGTTTCGTCAAGCTAAGGCTGAAGTCGGCAGCACAAGTCAAGGAGTACCGTTATCTTTTCTGCAGGAGGCTTCCAATATGGAAGATGATGACTTAAACCAGCTTCTCTAG 2817 0.4402 MQTGYNINDLYQEAQKRWLKPAEVMYILQNHEQYQITQETPQQPSSGSLFLFNRRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETSEGRSNSGPVTQQSPGSSSAFIQSPSSYATQKLGSTSTFGDSYEPNQSFSSPGSVEFTSDTFIKTNGKNHSDGTEAESGNSPELEVTQALRRLEEQLSLNEDIFKEIDSFSSEQENTYDSSPQQNTMAINNQDVTAAWPALSDQGQSYDGHGARQGHNCSDGIEKTLYWKEMLDSCKPLSSANLQEKHVYRPAGNENSLSSSGRLPIANKESSHWISFGSNNAEKSAFSLTQDIHGVGFSPYSSIETQEANLDYASFFDQNQVEAPLDVDLSLTVAQKQKFTIKEVSPGWGYANEATKVIIVGSFLCPPTSSTWACMFGDVEVPVEIIQDGVIRCEAPSHLPGKVTLCITSGNRESCSEVREFQYRSKDSCPHCNPLEAESTRSPEELLLLVRFAQIILADSSTTESGNYELDKQKFDDDSWSHVIEALLVGSGTSSGTVDWLLEELLKDKLLSWLSSRSHKRNEETGSSLSKKEQGIIHMAAGLGFEWALNPILSCGVNINFRDISGWTALHWAARFGREKMVASLIASGASAGAVTDPTAQDPTGKTAASIAANSGHKGLAGYLSEVSLTSHLSSLTLEESELSKGSAELEAELTVSTVSTEHLTASEDQISLKHTLAAVRNAAQAAARIQSAFRAHSFRKRIEREAAISAAAAISIQKKYRGWKGRKDFLALRKKVVKIQAHVRGYQARKHYKIICWVVGFFDKAVLRWKRKGAGLRGFRQERNSTDENEDEDILKVFRKQKVDEAVEQAVSRVLSMVDSPNARQQYHRMLEKFRQAKAEVGSTSQGVPLSFLQEASNMEDDDLNQLL 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5158g00045 938 ProSiteProfiles IQ motif profile. 802 826 IPR000048 GO:0005515
Pral5158g00045 938 SMART CG_1_2 10 128 IPR005559 GO:0003677
Pral5158g00045 938 FunFam Calmodulin-binding transcription activator 2 403 497 - -
Pral5158g00045 938 ProSiteProfiles Ankyrin repeat region circular profile. 634 660 - -
Pral5158g00045 938 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 910 - -
Pral5158g00045 938 SUPERFAMILY Ankyrin repeat 603 695 IPR036770 -
Pral5158g00045 938 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
Pral5158g00045 938 CDD IPT 409 494 - -
Pral5158g00045 938 Gene3D - 779 825 - -
Pral5158g00045 938 ProSiteProfiles IQ motif profile. 752 781 IPR000048 GO:0005515
Pral5158g00045 938 SMART ANK_2a 673 702 IPR002110 GO:0005515
Pral5158g00045 938 SMART ANK_2a 634 663 IPR002110 GO:0005515
Pral5158g00045 938 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Pral5158g00045 938 SMART iq_5 801 823 IPR000048 GO:0005515
Pral5158g00045 938 SMART iq_5 778 800 IPR000048 GO:0005515
Pral5158g00045 938 SMART iq_5 751 773 IPR000048 GO:0005515
Pral5158g00045 938 Gene3D - 540 699 IPR036770 -
Pral5158g00045 938 Gene3D Immunoglobulins 403 497 IPR013783 -
Pral5158g00045 938 FunFam Calmodulin-binding transcription activator 4 isoform A 516 699 - -
Pral5158g00045 938 Pfam IQ calmodulin-binding motif 803 823 IPR000048 GO:0005515
Pral5158g00045 938 Pfam IQ calmodulin-binding motif 781 799 IPR000048 GO:0005515
Pral5158g00045 938 Pfam Ankyrin repeats (3 copies) 607 694 IPR002110 GO:0005515
Pral5158g00045 938 FunFam Calmodulin-binding transcription activator 2 778 826 - -
Pral5158g00045 938 ProSiteProfiles IQ motif profile. 779 808 IPR000048 GO:0005515
Pral5158g00045 938 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
Pral5158g00045 938 MobiDBLite consensus disorder prediction 127 210 - -
Pral5158g00045 938 Pfam IPT/TIG domain 409 492 IPR002909 -
Pral5158g00045 938 SUPERFAMILY E set domains 409 493 IPR014756 -
Pral5158g00045 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 828 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5158g00045 Pral-Chr5158 781725 792988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5158g00045 5 937 CAMTA Transcription Factor Family AT1G67310 51.275 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pral5158g00045 CG-1 1e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5158g00045 K21596 - gmx:100786880 1261.51