Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5158g00040 ATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTATCAATCATATACATGAACTGGTTCAACAACGGAGGAATTATGGAAACCGAGGTTGGTTTTCTTGGTGGCGGCGGCAAGATGTGGCTCAAGTGGTGGGATAAGATCTCAGGCAATAGTCGTAAAATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAGCTTTTGCTGATATGGGTACTGGGCTGGGTCGTGGTATCTTTTTGGATCTTCCTCTTCATGACCTTGCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGCATGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATACTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCCATCGATCAGAGAACATTTGCTAGGTACACAGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAGAACCCCATTCATGAGGATGACTATGCCCCTGAGGCATTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCGTTTTTGCACAGGAAACCATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTTTTGCGTGCTAGAGAGTTAGGGAAAGGAGTTTTAACTGCTCCTTTTAGGCTGCTCAAAACAAATCATCTTGGAGTTATCCTCACCTTTGCAGTTTACAACACAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACAAATGGGTATCTTGGTGGCGTCTTTGATATTGAGTCATTGGTTGAAAAATTACTTCAACAACTAGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCAATGTATGGTTCAAACGTATCAGATGATGGATTCTATCATGTTAGTTCCCTGAACTTTGGAGATCCTTTTCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCCTGGTTGGCAATAGCCACATCAATTGGCATCCTTGTTATTGCGCTCCTTGTAGGTCATATTTTTCATGCTACTGTGAATCGAATTGCTAAGGTGGAGGATGATTACCGTGAGATGATGGAACTTAAAAAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACCGTTTCTCATGAGATCCGAACGCCAATGAATGGTGTTCTTGGAATGTTGCACTTGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACTGCACAGGGTAGTGGAAGAGCTCTAGTGTCGCTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATACGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAGAAGGGAGTAGAGTTGGCAGCGTATGTCTCAGATAAGGTTCCTGAACAGCTTGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACAGAGAAAGGGCACATATTTGTCACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATCGAAGTTGCAACATCAAAGAATACCCTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAATTCTGTCAGTCAAGAAGGACCTCTGGGTTCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTCATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTCAAGAAGCCCAATCCCGCATCTTTACCCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGCATTGGGCTGAGCATCAGCAAGTGCCTGGTTGGCCTCATGCACGGGGAAATTGGATTTGTGAGCTTTCCAAAGATTGGATCTACTTTCACATTTACTGCTGTCTTCACCAATGAATCCCCTATTTCAACTGAGGGTCAAACTCAGCAAATTAACAACCAACCTCACCTTGCATCCTCAGAATTTCAGGGCATGACCGCACTTGTTATAGACCCTAAACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCGGATTTAAATCAAGGTTTGTCTGTCATAAGCAATGTCGATATGATCTTAGTTGAACACGAAGTCTGGGATAGAGATTCTGGTGTTTCATCTCAGTTTATCAGTAACGTGAGGAAAATTGATCGTAGGGTTCCTCCAAATCTGTTCGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCATAACATTTGGTGTCAATAGTCCAACTGTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACATTACAGCGAGCCATGGGTGTGGGGAACAGGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCCGCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGACGACAATAGTGTGAACCGAACAGTGGCAGCTGGTGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGACAAGATGCCATCTCTATGCTGGAGCCGCCCCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACCAGGAGGATTCGGGAGATGGAACGTGTAAGCAGAGGAGAACTGCCTGTAAACAGAGGAGAAGTCCCTGTGGAGACCTTGGAGAATAATTCAAACTGCCACATGCCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACGCATGAGGAATGCCTAAGGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCTGAGCAGCTTTATCGGGAAGTTTCACGGTGTTTCCAATCCACTTCATGA 3093 0.4407 MSLLYVVGFGLKLGHLLLALCCWIVSIIYMNWFNNGGIMETEVGFLGGGGKMWLKWWDKISGNSRKIHQHYYQCIGSKKVRRTLWRKLLLIWVLGWVVVSFWIFLFMTLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVVFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQKEYVRTAQGSGRALVSLINEVLDQAKIESGKLELEAVLFDIRAVLDDVLSLFSEKSQEKGVELAAYVSDKVPEQLVGDPGRFRQIITNLMGNSIKFTEKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVADRCQSWKGFNSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPQEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSFPKIGSTFTFTAVFTNESPISTEGQTQQINNQPHLASSEFQGMTALVIDPKPVRAKVLRYHIKRLGIHVEIASDLNQGLSVISNVDMILVEHEVWDRDSGVSSQFISNVRKIDRRVPPNLFVLVNSSSSSRTSSITFGVNSPTVIVKPLRASMLAATLQRAMGVGNRGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGQDAISMLEPPHQFDACFMDIQMPEMDGFEATRRIREMERVSRGELPVNRGEVPVETLENNSNCHMPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRCFQSTS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5158g00040 1030 SUPERFAMILY CheY-like 737 867 IPR011006 -
Pral5158g00040 1030 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 710 IPR036890 -
Pral5158g00040 1030 Gene3D CHASE domain 160 389 IPR042240 -
Pral5158g00040 1030 CDD HATPase_EvgS-ArcB-TorS-like 560 713 - -
Pral5158g00040 1030 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Pral5158g00040 1030 SUPERFAMILY CheY-like 883 1026 IPR011006 -
Pral5158g00040 1030 Pfam Response regulator receiver domain 888 956 IPR001789 GO:0000160
Pral5158g00040 1030 SMART REC_2 886 1022 IPR001789 GO:0000160
Pral5158g00040 1030 FunFam Histidine kinase 4 160 389 - -
Pral5158g00040 1030 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Pral5158g00040 1030 Gene3D - 507 717 IPR036890 -
Pral5158g00040 1030 CDD REC_hyHK_CKI1_RcsC-like 888 1022 - -
Pral5158g00040 1030 Gene3D - 411 506 - -
Pral5158g00040 1030 SMART CHASE_2 156 357 IPR006189 -
Pral5158g00040 1030 PRINTS Bacterial sensor protein C-terminal signature 658 668 IPR004358 GO:0016310|GO:0016772
Pral5158g00040 1030 PRINTS Bacterial sensor protein C-terminal signature 675 693 IPR004358 GO:0016310|GO:0016772
Pral5158g00040 1030 PRINTS Bacterial sensor protein C-terminal signature 640 654 IPR004358 GO:0016310|GO:0016772
Pral5158g00040 1030 CDD PRTases_typeI 841 915 IPR000836 -
Pral5158g00040 1030 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Pral5158g00040 1030 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 713 IPR003594 -
Pral5158g00040 1030 ProSiteProfiles Histidine kinase domain profile. 450 715 IPR005467 -
Pral5158g00040 1030 Gene3D - 881 1029 - -
Pral5158g00040 1030 Gene3D - 736 863 - -
Pral5158g00040 1030 PANTHER TWO-COMPONENT HISTIDINE KINASE 121 1019 - -
Pral5158g00040 1030 Gene3D - 107 159 - -
Pral5158g00040 1030 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Pral5158g00040 1030 ProSiteProfiles Response regulatory domain profile. 743 861 IPR001789 GO:0000160
Pral5158g00040 1030 ProSiteProfiles Response regulatory domain profile. 887 1026 IPR001789 GO:0000160
Pral5158g00040 1030 SMART HKATPase_4 555 715 IPR003594 -
Pral5158g00040 1030 Pfam CHASE domain 159 355 IPR006189 -
Pral5158g00040 1030 FunFam Histidine kinase 4 415 506 - -
Pral5158g00040 1030 Coils Coil 420 440 - -
Pral5158g00040 1030 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5158g00040 Pral-Chr5158 761363 767955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5158g00040 1 1030 Miscellaneous Gene Families AT1G27320 67.871 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5158g00040 CHASE 2.1e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5158g00040 K14489 - gmx:100801546 1615.51