Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5158g00038 ATGTATATATTTGTAGATTGCCGGGACCACTTGATTTTGAATCTCTCAAGTCTTCAGATGGACTGGAATGCAAAGTCTTTCTCGCAGTGGGACTGGGAACACCTACTTTTTAACACAAAAGCAACTGAGAATCCTAGGTTAAAGCCAGTAGATTGGAGTGGCAAAGCAGATCGAGAAATCAATGTTGGGCTGTTCAATCCGTCATGTGGTCTTGATAGTTCTGGGTCTGAGGTACAGCATGTTTCTTCATCAAGGGGCTCAAAATCAGCTTCCATGAATTCATCAAATGGGTATAGCAAAACATCAGTGCTCACCTTTGACGGCTCCCAAGAAGATTCTAATGGTAAGAAAGAGAGATCCAAAGAAGAGCTTGTTGGAAATTCTCCAACACTTGAACATTCTTCTGTCTCTGGTGAACCACTGCACAGTCTAAAGCTTGGCAAACGGCTATACTTTGAAGATGTCTGTGTTGGAAGTGAATCAAAGAACACATCTCACTCTGGGATTCCTGTGCCATCTTTGAGTACTGGGAAAAAAGGCAAGTCAAATAGTCAGAGCTCACAACCTCCACTCTGCCAGGTTGAAAGCTGTAACCTTGACCTGACATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCAAATGTGATTGTAGGTGGTAAGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTCTCAGAGTTTGATGGAAAAAAAAGAAGTTGCCGTCGCCGTCTTTCTGATCATAACGCTAGGCGTCGAAAGCCTCATCCTGAAGCTGTCCAATTGAATGCACCATTTTTGTCCTCATCTCCATACGATGGGAGGCAACAGATGAGCCCCTTTCCTAATTCCAGGGGCACTATCAACTTCGCTTGGCAGGATACATGCAGCAACAGCAGCCGGATCTCCCAAACGAAAGAATTTCTCATGAAACCCGCAAAAGTAGGAGGTGCCATTGGGCAGGTGCATCAGCCCTTCAACGAGATCCCAAGTACCTTTTCTAAGCTTTCTGAAGGTTCTGGTGGCCTTTGCATACCCAAAGGCATAGCAACGAAGACAATCAATCCAGGGATAGAAGATTTCATTACTTCATCAGATCTGAATGCTCCACAAGACTTTCACCGTGCTCTCTCTCTTCTGTCAACCACCAACTCTTGGGGTCCATATGAGGCAAAGTTTGCTTCTCAAGAGCACTCCAATCGCACGACTCATACTGGTACGACTCAGCCTGTAACACATCCAATGATTCAGTGCTTGCCTTATGCTTCATCAGACTACTGGCAGACTTGTCCACAACCTGTTGCCGACTCCCGTATGGGTGTCTCATACTCGGACTGTAAAGATGACAGTCAGTTTGAAGATTTTCAGCTGCTCAGAGCACCCTATGAGTCTGGCTTTTGCAATCAGCTGGATTAA 1449 0.4527 MYIFVDCRDHLILNLSSLQMDWNAKSFSQWDWEHLLFNTKATENPRLKPVDWSGKADREINVGLFNPSCGLDSSGSEVQHVSSSRGSKSASMNSSNGYSKTSVLTFDGSQEDSNGKKERSKEELVGNSPTLEHSSVSGEPLHSLKLGKRLYFEDVCVGSESKNTSHSGIPVPSLSTGKKGKSNSQSSQPPLCQVESCNLDLTSAKDYHRKHRVCESHSKSPNVIVGGKERRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNARRRKPHPEAVQLNAPFLSSSPYDGRQQMSPFPNSRGTINFAWQDTCSNSSRISQTKEFLMKPAKVGGAIGQVHQPFNEIPSTFSKLSEGSGGLCIPKGIATKTINPGIEDFITSSDLNAPQDFHRALSLLSTTNSWGPYEAKFASQEHSNRTTHTGTTQPVTHPMIQCLPYASSDYWQTCPQPVADSRMGVSYSDCKDDSQFEDFQLLRAPYESGFCNQLD 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5158g00038 482 MobiDBLite consensus disorder prediction 111 126 - -
Pral5158g00038 482 Pfam SBP domain 192 265 IPR004333 GO:0003677
Pral5158g00038 482 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Pral5158g00038 482 MobiDBLite consensus disorder prediction 160 191 - -
Pral5158g00038 482 MobiDBLite consensus disorder prediction 72 110 - -
Pral5158g00038 482 FunFam Squamosa promoter-binding-like protein 14 183 253 - -
Pral5158g00038 482 Gene3D - 182 253 IPR036893 GO:0003677|GO:0005634
Pral5158g00038 482 SUPERFAMILY SBT domain 190 271 IPR036893 GO:0003677|GO:0005634
Pral5158g00038 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 349 IPR044817 GO:0003677
Pral5158g00038 482 MobiDBLite consensus disorder prediction 72 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5158g00038 Pral-Chr5158 690878 696172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5158g00038 20 452 SBP-box Gene Family AT5G43270 38.478 1.19e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5158g00038 SBP 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5158g00038 - - pcin:129309383 791.956