Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5158g00037 ATGGACTGGAATGCAAAGTCTTTCTCGCAGTGGGACTGGGAACACCTACTTTTTAACACAAAAGCAACTGAGAATCCTAGGTTAAAGCCAGTAGATTGGAGTGGCAAAGCAGATCGAGAAATCAATGTTGGGCTGTTCAATCCGTCATGTGGTCTTGATAGTTCTGGGTCTGAGGTACAGCATGTTTCTTCATCAAGGGGCTCAAAATCAGCTTCCATGAATTCATCAAATGGGTATAGCAAAACATCAGTGCTCACCTTTGACGGCTCCCAAGAAGATTCTAATGGTAAGAAAGAGAGATCCAAAGAAGAGCTTGTTGGAAATTCTCCAACACTTGAACATTCTTCTGTCTCTGGTGAACCACTGCACAGTCTAAAGCTTGGCAAACGGCTATACTTTGAAGATGTCTGTGTTGGAAGTGAATCAAAGAACACATCTCACTCTGGGATTCCTGTGCCATCTTTGAGTACTGGGAAAAAAGGCAAGTCAAATAGTCAGAGCTCACAACCTCCACTCTGCCAGGTTGAAAGCTGTAACCTTGACCTGACATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCAAATGTGATTGTAGGTGGTAAGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTCTCAGAGTTTGATGGAAAAAAAAGAAGTTGCCGTCGCCGTCTTTCTGATCATAACGCTAGGCGTCGAAAGCCTCATCCTGAAGCTGTCCAATTGAATGCACCATTTTTGTCCTCATCTCCATACGATGGGAGGCAACAGATGAGCCCCTTTCCTAATTCCAGGGGCACTATCAACTTCGCTTGGCAGGATACATGCAGCAACAGCAGCCGGATCTCCCAAACGAAAGAATTTCTCATGAAACCCGCAAAAGTAGGAGGTGCCATTGGGCAGGTGCATCAGCCCTTCAACGAGATCCCAAGTACCTTTTCTAAGCTTTCTGAAGGTTCTGGTGGCCTTTGCATACCCAAAGGCATAGCAACGAAGACAATCAATCCAGGGATAGAAGATTTCATTACTTCATCAGATCTGAATGCTCCACAAGACTTTCACCGTGCTCTCTCTCTTCTGTCAACCACCAACTCTTGGGGTCCATATGAGGCAAAGTTTGCTTCTCAAGAGCACTCCAATCGCACGACTCATACTGGTACGACTCAGCCTGTAACACATCCAATGATTCAGTGCTTGCCTTATGCTTCATCAGACTACTGGCAGACTTGTCCACAACCTGTTGCCGACTCCCGTATGGGTGTCTCATACTCGGACTGTAAAGATGACAGTCAGTTTGAAGATTTTCAGCTGCTCAGAGCACCCTATGAGTCTGGCTTTTGCAATCAGCTGGATTAA 1392 0.4562 MDWNAKSFSQWDWEHLLFNTKATENPRLKPVDWSGKADREINVGLFNPSCGLDSSGSEVQHVSSSRGSKSASMNSSNGYSKTSVLTFDGSQEDSNGKKERSKEELVGNSPTLEHSSVSGEPLHSLKLGKRLYFEDVCVGSESKNTSHSGIPVPSLSTGKKGKSNSQSSQPPLCQVESCNLDLTSAKDYHRKHRVCESHSKSPNVIVGGKERRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNARRRKPHPEAVQLNAPFLSSSPYDGRQQMSPFPNSRGTINFAWQDTCSNSSRISQTKEFLMKPAKVGGAIGQVHQPFNEIPSTFSKLSEGSGGLCIPKGIATKTINPGIEDFITSSDLNAPQDFHRALSLLSTTNSWGPYEAKFASQEHSNRTTHTGTTQPVTHPMIQCLPYASSDYWQTCPQPVADSRMGVSYSDCKDDSQFEDFQLLRAPYESGFCNQLD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5158g00037 463 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 330 IPR044817 GO:0003677
Pral5158g00037 463 Gene3D - 163 234 IPR036893 GO:0003677|GO:0005634
Pral5158g00037 463 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Pral5158g00037 463 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
Pral5158g00037 463 MobiDBLite consensus disorder prediction 53 120 - -
Pral5158g00037 463 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Pral5158g00037 463 MobiDBLite consensus disorder prediction 92 107 - -
Pral5158g00037 463 MobiDBLite consensus disorder prediction 53 91 - -
Pral5158g00037 463 Pfam SBP domain 173 246 IPR004333 GO:0003677
Pral5158g00037 463 MobiDBLite consensus disorder prediction 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5158g00037 Pral-Chr5158 690878 696172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5158g00037 1 433 SBP-box Gene Family AT5G43270 38.478 5.06e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5158g00037 SBP 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5158g00037 - - pcin:129309383 791.956